Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C11
(623 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23 p... 188 1e-47
X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein pr... 188 1e-47
X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17 pro... 188 1e-47
BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein. 188 1e-47
BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23 p... 188 1e-47
BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23 p... 188 1e-47
BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal pr... 188 1e-47
AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23 p... 188 1e-47
BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein. 83 1e-15
BC014444-1|AAH14444.1| 373|Homo sapiens sphingomyelin phosphodi... 31 2.5
AL512288-4|CAI14294.1| 373|Homo sapiens sphingomyelin phosphodi... 31 2.5
>BC062716-1|AAH62716.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 188 bits (459), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVRPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>X55954-1|CAA39417.1| 140|Homo sapiens HL23 ribosomal protein
protein.
Length = 140
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>X52839-1|CAA37023.1| 140|Homo sapiens ribosomal protein L17
protein.
Length = 140
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>BC106061-1|AAI06062.1| 140|Homo sapiens RPL23 protein protein.
Length = 140
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>BC104651-1|AAI04652.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>BC010114-1|AAH10114.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>BC003518-1|AAH03518.1| 134|Homo sapiens Similar to ribosomal
protein L23 protein.
Length = 134
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 27 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 86
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 87 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 125
Score = 35.9 bits (79), Expect = 0.12
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 88 GGSAGAKFRISLGLPAGS 141
GGS+GAKFRISLGLP G+
Sbjct: 1 GGSSGAKFRISLGLPVGA 18
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 16 VGAVINCADNTGAK 29
>AB061827-1|BAB79465.1| 140|Homo sapiens ribosomal protein L23
protein.
Length = 140
Score = 188 bits (458), Expect = 1e-47
Identities = 86/99 (86%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKKV PAVVIRQRK +RR+D
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G F+YFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>BC034378-1|AAH34378.1| 77|Homo sapiens RPL23 protein protein.
Length = 77
Score = 82.6 bits (195), Expect = 1e-15
Identities = 37/43 (86%), Positives = 42/43 (97%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK 296
GAKNLY+I+V+GIKGRLNRLPAAG GDM++ATVKKGKPELRKK
Sbjct: 33 GAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKK 75
Score = 48.0 bits (109), Expect = 3e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGGS+GAKFRISLGLP G+
Sbjct: 1 MSKRGRGGSSGAKFRISLGLPVGA 24
Score = 30.3 bits (65), Expect = 5.8
Identities = 12/14 (85%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAVINCADNTG K
Sbjct: 22 VGAVINCADNTGAK 35
>BC014444-1|AAH14444.1| 373|Homo sapiens sphingomyelin
phosphodiesterase, acid-like 3B protein.
Length = 373
Score = 31.5 bits (68), Expect = 2.5
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +2
Query: 5 VRQQKLLASRPYYFFLNFDTTKCLREDVVVPRERN----SVSPWVSQLGAVINCADNTGR 172
VR+ + + ++ + D+ + L +D VP V+PW + L V+N A+N
Sbjct: 263 VRKHHRVIAGQFFGHHHTDSFRMLYDDAGVPISAMFITPGVTPWKTTLPGVVNGANNPAI 322
Query: 173 KESVCDRS--PRYQRSPEQTAGGRFRGHDC 256
+ DR+ RSP + GG + G C
Sbjct: 323 RVFEYDRATLSLKVRSPAEARGGGWEGLKC 352
>AL512288-4|CAI14294.1| 373|Homo sapiens sphingomyelin
phosphodiesterase, acid-like 3B protein.
Length = 373
Score = 31.5 bits (68), Expect = 2.5
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Frame = +2
Query: 5 VRQQKLLASRPYYFFLNFDTTKCLREDVVVPRERN----SVSPWVSQLGAVINCADNTGR 172
VR+ + + ++ + D+ + L +D VP V+PW + L V+N A+N
Sbjct: 263 VRKHHRVIAGQFFGHHHTDSFRMLYDDAGVPISAMFITPGVTPWKTTLPGVVNGANNPAI 322
Query: 173 KESVCDRS--PRYQRSPEQTAGGRFRGHDC 256
+ DR+ RSP + GG + G C
Sbjct: 323 RVFEYDRATLSLKVRSPAEARGGGWEGLKC 352
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,009,391
Number of Sequences: 237096
Number of extensions: 1903011
Number of successful extensions: 4285
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4285
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6747805200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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