Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C11
(623 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA... 197 9e-51
M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal prot... 183 2e-46
U43733-1|AAA86639.1| 904|Drosophila melanogaster Abrupt protein. 29 3.9
BT003807-1|AAO41490.1| 369|Drosophila melanogaster AT11330p pro... 29 3.9
BT001583-1|AAN71338.1| 894|Drosophila melanogaster RE25924p pro... 29 3.9
AE014134-2051|AAN10774.1| 894|Drosophila melanogaster CG4807-PB... 29 3.9
AE014134-2050|AAF53087.2| 904|Drosophila melanogaster CG4807-PA... 29 3.9
Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger... 29 6.8
BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p pro... 29 6.8
AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB... 29 6.8
AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA... 29 6.8
>AE013599-3487|AAF46914.1| 140|Drosophila melanogaster CG3661-PA
protein.
Length = 140
Score = 197 bits (481), Expect = 9e-51
Identities = 93/99 (93%), Positives = 94/99 (94%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKPELRKKVMPAVVIRQRKPFRRRD
Sbjct: 33 GAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G FIYFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGG+AG KFRISLGLP G+
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGA 24
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAV+NCADNTG K
Sbjct: 22 VGAVMNCADNTGAK 35
>M85295-1|AAA28867.1| 140|Drosophila melanogaster ribosomal protein
L17A protein.
Length = 140
Score = 183 bits (445), Expect = 2e-46
Identities = 87/99 (87%), Positives = 88/99 (88%)
Frame = +3
Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
GAKNLYVIAV GI+GRLNRLPAAG GDM VATVKKGKPELRKKV RQRKPFRRRD
Sbjct: 33 GAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPELRKKVSVVPSARQRKPFRRRD 92
Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
G FIYFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93 GVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131
Score = 46.4 bits (105), Expect = 3e-05
Identities = 20/24 (83%), Positives = 22/24 (91%)
Frame = +1
Query: 70 MSKRGRGGSAGAKFRISLGLPAGS 141
MSKRGRGG+AG KFRISLGLP G+
Sbjct: 1 MSKRGRGGTAGGKFRISLGLPVGA 24
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 134 LGAVINCADNTGRK 175
+GAV+NCADNTG K
Sbjct: 22 VGAVMNCADNTGAK 35
>U43733-1|AAA86639.1| 904|Drosophila melanogaster Abrupt protein.
Length = 904
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 376 ALSSKYINXPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 206
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842
>BT003807-1|AAO41490.1| 369|Drosophila melanogaster AT11330p
protein.
Length = 369
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 376 ALSSKYINXPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 206
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 250 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 307
>BT001583-1|AAN71338.1| 894|Drosophila melanogaster RE25924p
protein.
Length = 894
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 376 ALSSKYINXPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 206
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832
>AE014134-2051|AAN10774.1| 894|Drosophila melanogaster CG4807-PB,
isoform B protein.
Length = 894
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 376 ALSSKYINXPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 206
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 775 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 832
>AE014134-2050|AAF53087.2| 904|Drosophila melanogaster CG4807-PA,
isoform A protein.
Length = 904
Score = 29.5 bits (63), Expect = 3.9
Identities = 25/59 (42%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = -2
Query: 376 ALSSKYINXPSRLLNG-FRCLMTTAGITFFRSSGLPFLTVATIMSPEPAAGSLF-RRPL 206
A+ N P LL G F AG F SG P LT+ IM E AAG+L RPL
Sbjct: 785 AMGHSLDNLPPGLLPGQFDLSKLAAGNPAFGQSG-PGLTIEPIMRHEQAAGNLSPNRPL 842
>Z11527-1|CAA77616.1| 614|Drosophila melanogaster CYS3HIS finger
protein protein.
Length = 614
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 318 RQRKPFRRRDGXFIYFEDN 374
R+R+P R+RDG F Y DN
Sbjct: 72 RRRRPVRKRDGTFNYSADN 90
>BT021256-1|AAX33404.1| 608|Drosophila melanogaster RE58038p
protein.
Length = 608
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 318 RQRKPFRRRDGXFIYFEDN 374
R+R+P R+RDG F Y DN
Sbjct: 66 RRRRPVRKRDGTFNYSADN 84
>AE014297-3282|AAO41594.1| 599|Drosophila melanogaster CG4620-PB,
isoform B protein.
Length = 599
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 318 RQRKPFRRRDGXFIYFEDN 374
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
>AE014297-3281|AAO41593.1| 599|Drosophila melanogaster CG4620-PA,
isoform A protein.
Length = 599
Score = 28.7 bits (61), Expect = 6.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 318 RQRKPFRRRDGXFIYFEDN 374
R+R+P R+RDG F Y DN
Sbjct: 57 RRRRPVRKRDGTFNYSADN 75
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,468,785
Number of Sequences: 53049
Number of extensions: 602395
Number of successful extensions: 1533
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1533
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2579793750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -