Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C11
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal prot...   179   1e-45
U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical pr...    27   8.2  
L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome regu...    27   8.2  
AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription...    27   8.2  

>U32305-14|AAK18857.1|  140|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 23 protein.
          Length = 140

 Score =  179 bits (436), Expect = 1e-45
 Identities = 83/99 (83%), Positives = 90/99 (90%)
 Frame = +3

Query: 168 GAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIRQRKPFRRRD 347
           GAKNL+VI+V GI+GRLNRLP+AG GDM V +VKKGKPELRKKV+  VVIRQRK FRR+D
Sbjct: 33  GAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPELRKKVLQGVVIRQRKQFRRKD 92

Query: 348 GXFIYFEDNAGVIXNNKGEMKGSAITGPVAKECADLWPR 464
           G FIYFEDNAGVI NNKGEMKGSAITGPVAKECADLWPR
Sbjct: 93  GTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPR 131



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/24 (83%), Positives = 23/24 (95%)
 Frame = +1

Query: 70  MSKRGRGGSAGAKFRISLGLPAGS 141
           MSKRGRGG++GAKFRISLGLP G+
Sbjct: 1   MSKRGRGGASGAKFRISLGLPVGA 24



 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +2

Query: 134 LGAVINCADNTGRKE----SVCDRSPRYQRSPEQTAGGRF 241
           +GAV+NCADNTG K     SV     R  R P    G  F
Sbjct: 22  VGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMF 61


>U40411-2|AAR25660.2|  413|Caenorhabditis elegans Hypothetical
           protein B0403.5 protein.
          Length = 413

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 189 SHTDSLRPVLSAQLITAPSWETQGDTEFRSRGTTTSSLRHF 67
           S T   RPVL+ + +T  +W T       ++ TTT++LR++
Sbjct: 356 STTPFFRPVLTTRPVTTTTWRTTRRITTTTKPTTTTTLRNY 396


>Z72505-5|CAE11304.1|  333|Caenorhabditis elegans Hypothetical
           protein C50C10.8 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
 Frame = -2

Query: 277 LPFLTVATIMSPEPAAGSLFRRPLIPWTAITYRFFAP--CV---VGAVDYCSQLGDPGRY 113
           LPFL     ++   +A +  R  ++ W       F P  CV   V +  YC QLG P  +
Sbjct: 127 LPFLVSIIRLTLLRSAYNNIRTKIMKWVVFPLLVFVPLFCVSFMVPSTGYCRQLGSPFLF 186

Query: 112 G 110
           G
Sbjct: 187 G 187


>Z99171-7|CAB16312.1|  188|Caenorhabditis elegans Hypothetical
           protein F47G4.8 protein.
          Length = 188

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 521 TQLLILNVYSSYRARV*GNTRPQISTFFGYRPCDGRALHFALVI 390
           T LL  ++  S RAR+     P +  F  YRPC  R L +  ++
Sbjct: 80  TTLLGNSIAPSPRARLTSQCSPGLGGFGVYRPCTSRTLPYRQIL 123


>Z75541-6|CAA99857.2|  644|Caenorhabditis elegans Hypothetical
           protein F52B5.5a protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 490 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNXHL-QCKCAKLKYT 618
           LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


>L09634-2|AAA27966.1|  504|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 3 protein.
          Length = 504

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 156 PTTQGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKVMPAVVIR 320
           P T+ AK+L  IAV+ IK +L  L      + ++  V +  P+ RK++   V+ +
Sbjct: 23  PATEPAKDLNAIAVENIKEQLAALDK--GEEHLITRVLQVLPKTRKQINDNVLYK 75


>AF440800-1|AAL28139.1|  644|Caenorhabditis elegans transcription
           factor CEP-1 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 490 LEYTFKISSCVLLSFPSTSKSNPKNYNLRNXHL-QCKCAKLKYT 618
           LE  F +++      PSTS S+P N N R   L +C      YT
Sbjct: 445 LENMFNVTNTTAQMEPSTSYSSPSNSNNRKRFLNECDSPNNDYT 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,614,631
Number of Sequences: 27780
Number of extensions: 287910
Number of successful extensions: 721
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)