Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_C07
(568 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 296 3e-79
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 163 2e-39
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 132 4e-30
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 125 8e-28
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 120 2e-26
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 112 5e-24
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 111 1e-23
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 108 1e-22
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 107 2e-22
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 106 3e-22
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 100 3e-20
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 98 1e-19
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 97 3e-19
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 96 4e-19
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 95 1e-18
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 93 5e-18
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 91 2e-17
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 90 4e-17
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 88 1e-16
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 87 2e-16
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 81 2e-14
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 76 5e-13
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 62 1e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 5e-08
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 58 1e-07
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 54 3e-06
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 53 4e-06
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 52 1e-05
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 51 2e-05
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 50 3e-05
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 50 5e-05
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 50 5e-05
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 49 7e-05
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 49 9e-05
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 49 9e-05
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 49 9e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 48 1e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 47 3e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 47 4e-04
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 46 6e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 8e-04
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 45 0.001
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.001
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 44 0.002
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 44 0.002
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 44 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 44 0.002
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 44 0.003
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 43 0.006
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 42 0.008
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.008
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.008
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.013
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 42 0.013
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 42 0.013
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.018
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 41 0.018
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.018
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.023
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.031
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.041
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.041
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 40 0.041
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.054
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 40 0.054
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.071
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.16
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.16
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.16
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.22
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.29
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.29
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 37 0.38
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.38
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 37 0.38
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.50
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.50
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.66
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.5
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.5
UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;... 35 1.5
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.0
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 2.0
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 34 2.0
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 2.0
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 2.7
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 33 3.5
UniRef50_Q4SBP2 Cluster: Chromosome 18 SCAF14665, whole genome s... 33 4.7
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.7
UniRef50_Q5GW70 Cluster: Putative uncharacterized protein; n=1; ... 32 8.1
UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1; ... 32 8.1
UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1; ... 32 8.1
UniRef50_A0BWU2 Cluster: Chromosome undetermined scaffold_133, w... 32 8.1
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 296 bits (726), Expect = 3e-79
Identities = 141/157 (89%), Positives = 152/157 (96%)
Frame = +1
Query: 97 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 276
RPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKDP+RLFEGNAL
Sbjct: 18 RPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNAL 77
Query: 277 LRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 456
LRRLVRIGVLDE +MKL Y+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRV
Sbjct: 78 LRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRV 137
Query: 457 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVK 567
RKQVVNIPSFIVRLDS KHIDFSL+SP+GGGRP RVK
Sbjct: 138 RKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVK 174
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 163 bits (397), Expect = 2e-39
Identities = 78/146 (53%), Positives = 107/146 (73%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 279
P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPKRL EG ALL
Sbjct: 18 PYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALL 77
Query: 280 RRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 459
RRL +G+L Q KL +VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V
Sbjct: 78 RRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVG 137
Query: 460 KQVVNIPSFIVRLDSGKHIDFSLKSP 537
KQVV++PSF+VR++S I + +P
Sbjct: 138 KQVVDVPSFLVRVESEPLIQLADNTP 163
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 132 bits (320), Expect = 4e-30
Identities = 69/118 (58%), Positives = 84/118 (71%)
Frame = +1
Query: 97 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 276
RP+EK R D ELK+ GEYGLR+K E+WRV+ ELLTL+EK+P+R+FEG AL
Sbjct: 19 RPYEKERPDAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEAL 67
Query: 277 LRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 450
LR + R G+L E Q KL YVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 68 LRHMNRYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 125 bits (301), Expect = 8e-28
Identities = 75/140 (53%), Positives = 90/140 (64%), Gaps = 7/140 (5%)
Frame = +1
Query: 169 EVWRVKYTLARIRKAARELLTL-EEKDPKRLFEGNALLRRLVRIGVLDEKQMK------L 327
EVWRVK+TL +IRKA ELL L EKDP+ LFE N LLR+LV G+L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 328 XYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 507
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 508 KHIDFSLKSPFGGGRPXRVK 567
KH DF GGG P VK
Sbjct: 160 KHTDFFRHCLNGGGYPGSVK 179
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 120 bits (290), Expect = 2e-26
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 9/157 (5%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL-FEGNAL 276
PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT +P+ + G +L
Sbjct: 16 PFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSL 73
Query: 277 LRRLVRIGVL------DEKQMK--LXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 432
LRRL++ G+L D++++ L VL L I +LERRLQ +VF AGLAKS+HHAR+L
Sbjct: 74 LRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLL 133
Query: 433 IRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG 543
I R I ++ Q+V++P F+VR D I+++ S +G
Sbjct: 134 IGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 112 bits (270), Expect = 5e-24
Identities = 57/145 (39%), Positives = 90/145 (62%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 279
P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K K + +L
Sbjct: 20 PYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQSYGIL 79
Query: 280 RRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 459
+ ++ L ++ + + L RRLQT V + L+K+IH ARILI +HI+V+
Sbjct: 80 WFCYKYNFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVK 139
Query: 460 KQVVNIPSFIVRLDSGKHIDFSLKS 534
Q+VN PSF+VR D+ I FSL S
Sbjct: 140 NQIVNKPSFLVRKDNEIFISFSLNS 164
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 111 bits (267), Expect = 1e-23
Identities = 63/151 (41%), Positives = 91/151 (60%), Gaps = 3/151 (1%)
Frame = +1
Query: 97 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-EEKDPKRLFEG-- 267
RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L + +FE
Sbjct: 16 RPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKK 75
Query: 268 NALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 447
+ L+ + R G+L + VL LK+ LERRLQT V++ GLA+S AR L+ H
Sbjct: 76 SELISHMQRAGLLG-PDADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGH 134
Query: 448 IRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 540
I + + V +P ++V I ++ KSPF
Sbjct: 135 IAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 108 bits (259), Expect = 1e-22
Identities = 59/147 (40%), Positives = 88/147 (59%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 279
P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L + R L+
Sbjct: 17 PWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLI 74
Query: 280 RRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 459
++L R+G++++ L +LGL E++LERRLQT V+K GLA++I+ AR LI HI +
Sbjct: 75 QKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIG 134
Query: 460 KQVVNIPSFIVRLDSGKHIDFSLKSPF 540
+ V P +IV IDF SPF
Sbjct: 135 GRRVTSPGYIVMRGEEDLIDFYPTSPF 161
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 107 bits (256), Expect = 2e-22
Identities = 60/150 (40%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Frame = +1
Query: 97 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRL---FEG 267
RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+ ++ +
Sbjct: 16 RPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKK 75
Query: 268 NALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRH 447
+ L+ L R G+L E + VL LK+E L+RRLQTQV++ G A+S AR I H
Sbjct: 76 DELIGSLQRSGMLSE-NADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGH 134
Query: 448 IRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 537
I + + V IP + V + I ++ SP
Sbjct: 135 IAIGGRRVTIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 106 bits (255), Expect = 3e-22
Identities = 63/170 (37%), Positives = 95/170 (55%), Gaps = 1/170 (0%)
Frame = +1
Query: 61 RRYFQRRT*HLARPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 240
RR F++ P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++ +
Sbjct: 5 RRRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--D 62
Query: 241 KDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHH 420
+ + E L L + G+L + L VL L +ED LERRLQT VF+ GLA++
Sbjct: 63 RTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQ 122
Query: 421 ARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFG-GGRPXRVK 567
AR LI HI V +VV PS++V ++ I ++ SPF P R K
Sbjct: 123 ARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 100 bits (239), Expect = 3e-20
Identities = 55/132 (41%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Frame = +1
Query: 103 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDPKRLFEGNAL 276
+ K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P +
Sbjct: 20 WNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PF 75
Query: 277 LRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 456
+L ++G +++ ++L +L L + LERRLQT V++ GLAKSIHHAR LI H+ V
Sbjct: 76 KEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAV 135
Query: 457 RKQVVNIPSFIV 492
+ V P F+V
Sbjct: 136 AGRRVTSPGFLV 147
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 98.3 bits (234), Expect = 1e-19
Identities = 60/147 (40%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL-LTLEEKDPKRLFEGNAL 276
P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L L D + +
Sbjct: 17 PWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQKQLERM 76
Query: 277 LRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 456
++RL R +L +K L VL L +E+ L+RRLQT VFK LA S AR LI HI V
Sbjct: 77 IKRLSRYKILSDK-ATLDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITV 135
Query: 457 RKQVVNIPSFIVRLDSGKHIDFSLKSP 537
+ V +P +V I + SP
Sbjct: 136 NGRRVTVPGMLVEAQYEDTIAYYENSP 162
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 96.7 bits (230), Expect = 3e-19
Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 5/151 (3%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE-----KDPKRLFE 264
P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL + +D + +
Sbjct: 17 PWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRD 76
Query: 265 GNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 444
++++L +G+L E KL VL LK++D +ERRLQT +++ G A SI AR I
Sbjct: 77 AQNIVKKLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHG 135
Query: 445 HIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 537
HI + + + +P ++V + + + SP
Sbjct: 136 HISLNGRKITVPGYLVLKSEEDMLSYYVGSP 166
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 96.3 bits (229), Expect = 4e-19
Identities = 59/168 (35%), Positives = 94/168 (55%)
Frame = -2
Query: 552 TTSTEWRFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQ 373
+++TEWR EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ
Sbjct: 24 SSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQ 83
Query: 372 TTLQEVLNLQTKHIXEFHLFFIQYSNTNQTT*KGITFEQXXXXXXXXXXXXXXXXXXXXE 193
++ QE+ NLQ++ I + L F Q +N++Q++ + ITFEQ +
Sbjct: 84 SSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSDLRQ 143
Query: 192 RVFDAPYFTLVAETVLSDDLQLLVKTCLFKRTSEVSRTSLKIPTVLCC 49
++ F+LV +TV + LQ V+T F R S SR SL + + C
Sbjct: 144 LERNSVNFSLVLQTVFTSQLQFGVQTSGFVR-SLWSRVSLGVSSWGSC 190
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 95.1 bits (226), Expect = 1e-18
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Frame = +1
Query: 94 ARPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNA 273
+ P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++ + + E
Sbjct: 12 SHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEKE 70
Query: 274 -LLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 450
L +L ++GVL E +L VL L ++D LERRLQT + + GLAK++ AR I HI
Sbjct: 71 RFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHI 129
Query: 451 RVRKQVVNIPSFIVRLDSGKHIDFSLKSP 537
V +VV+ PS++V+ + I+F SP
Sbjct: 130 MVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 92.7 bits (220), Expect = 5e-18
Identities = 52/153 (33%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE-------EKDPKRL 258
P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL E +
Sbjct: 17 PWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYA 76
Query: 259 FEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIR 438
+ +L +L+R G++ + + +L LK E+ LERRLQTQV + GLA+++ AR I
Sbjct: 77 TQSEEILSKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFIT 135
Query: 439 QRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSP 537
HI + + IP +V + HI + SP
Sbjct: 136 HGHIAINGRKATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 91.1 bits (216), Expect = 2e-17
Identities = 49/143 (34%), Positives = 81/143 (56%)
Frame = +1
Query: 94 ARPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNA 273
+ P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++ + R +
Sbjct: 15 SHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDE--RADKEKE 72
Query: 274 LLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIR 453
LL LVR G + KL VL L +ED L RRLQ+ VFK GL+ + AR+ + HI
Sbjct: 73 LLDHLVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHIT 131
Query: 454 VRKQVVNIPSFIVRLDSGKHIDF 522
+ + +N P +V ++IDF
Sbjct: 132 LNGKKINAPGHLVEKADEENIDF 154
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 89.8 bits (213), Expect = 4e-17
Identities = 53/146 (36%), Positives = 80/146 (54%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 279
P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++ ++ E L
Sbjct: 17 PWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLF 74
Query: 280 RRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 459
L R G+L ++ L VL L +E LERRLQT VF+ GLA + AR I HI V
Sbjct: 75 GILNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVN 134
Query: 460 KQVVNIPSFIVRLDSGKHIDFSLKSP 537
+ +N PS++V L I + SP
Sbjct: 135 GKKINAPSYLVPLVEEDAISYMPNSP 160
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 88.2 bits (209), Expect = 1e-16
Identities = 56/148 (37%), Positives = 81/148 (54%)
Frame = +1
Query: 97 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 276
RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L ++ +R + L
Sbjct: 16 RPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRER--KEPVL 73
Query: 277 LRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 456
LR L RIG++ K L VL L++ D L RRLQT V K + + AR + HI +
Sbjct: 74 LRSLARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITI 132
Query: 457 RKQVVNIPSFIVRLDSGKHIDFSLKSPF 540
+VV IPS+ V ++ I + S F
Sbjct: 133 SDRVVTIPSYTVYVEEEGDIKLTGGSAF 160
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 87.4 bits (207), Expect = 2e-16
Identities = 50/141 (35%), Positives = 76/141 (53%)
Frame = +1
Query: 100 PFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 279
P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL G +
Sbjct: 17 PYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFV 71
Query: 280 RRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 459
RL RIG+L E++ +L VL L++ D LERRLQT V++ GLA ++ AR + H+ V
Sbjct: 72 ARLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVD 130
Query: 460 KQVVNIPSFIVRLDSGKHIDF 522
V PS+ V + + F
Sbjct: 131 GSRVTEPSYTVPVSEENTLAF 151
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 81.0 bits (191), Expect = 2e-14
Identities = 49/127 (38%), Positives = 72/127 (56%)
Frame = +1
Query: 112 ARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLV 291
AR+ + +I EYGL N E+W+V+ ++R+R R LL+ + ++ R+V
Sbjct: 21 ARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSHDT----SDKIIARMV 76
Query: 292 RIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 471
+ G+L E L VL + FLERRLQT VFK GLA++I AR LI I V + V
Sbjct: 77 KFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRV 135
Query: 472 NIPSFIV 492
+IP ++V
Sbjct: 136 SIPGYMV 142
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 76.2 bits (179), Expect = 5e-13
Identities = 40/69 (57%), Positives = 44/69 (63%)
Frame = -3
Query: 563 TRXGRPPPNGDFREKSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNT 384
TR GRPPP+G+ KSMC S RT G FT CL TRI RIK A D ARP+L T
Sbjct: 50 TRPGRPPPSGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
Query: 383 CVCRRRSKK 357
VC+RRSKK
Sbjct: 110 SVCKRRSKK 118
Score = 33.1 bits (72), Expect = 4.7
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = -2
Query: 180 APYFTLVAETVLSDDLQLLVKTCLFKRTSEV 88
AP +LVA+ L+DDLQL V+ L +RTS +
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRL 197
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 61.7 bits (143), Expect = 1e-08
Identities = 37/118 (31%), Positives = 58/118 (49%)
Frame = +1
Query: 139 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 318
I +YGLR++ E + + ++RK A L L+E DP R L+ RL +GV+ K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 319 MKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
KL + + F ERRL + + + S A + H+R+ +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 5e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +1
Query: 172 VWRVKYTLARIRKAARELLTLEEKDPKRLF 261
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 58.4 bits (135), Expect = 1e-07
Identities = 36/122 (29%), Positives = 60/122 (49%)
Frame = +1
Query: 127 ELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVL 306
EL+++ Y L+ + + R +R+ AR L L E+D R+ ALL +L +G++
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLV 89
Query: 307 DEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
+ L + F RRL T + K +A+ + A + Q H+RV VV P+F
Sbjct: 90 PTRG-SLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 487 IV 492
+V
Sbjct: 149 LV 150
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 53.6 bits (123), Expect = 3e-06
Identities = 26/38 (68%), Positives = 29/38 (76%)
Frame = +1
Query: 454 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVK 567
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVK
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVK 64
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 53.2 bits (122), Expect = 4e-06
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Frame = +1
Query: 127 ELKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 303
E+KI+ Y ++ KRE + L+R IR+ ++ ++ K P R LL +L +G+
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRTEMSGLLLEKLYVLGL 87
Query: 304 LDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 483
+ K L + F RRL + + +++++ HA +I H+RV VV P+
Sbjct: 88 IPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 484 FIV 492
F+V
Sbjct: 147 FLV 149
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 51.6 bits (118), Expect = 1e-05
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +1
Query: 307 DEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSI 414
D ++ KL YVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 51.2 bits (117), Expect = 2e-05
Identities = 31/123 (25%), Positives = 58/123 (47%)
Frame = +1
Query: 124 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 303
++ +++ Y ++N+ + + IR+ A +L L DP R LL +L +GV
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 304 LDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 483
L K + + RRL + + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 484 FIV 492
++V
Sbjct: 148 YLV 150
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 50.4 bits (115), Expect = 3e-05
Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Frame = +1
Query: 64 RYFQRRT*HLARPFEKARLD--QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 237
+Y +++ ++ R+D +E KI+ Y +++ E + + RI K EL L
Sbjct: 5 KYHEQKLLKKVNIYDWKRVDTHRETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLP 64
Query: 238 EKDPKRLFEGNALLRRLVRIGV----LDEKQMKLXYVLG-------LKIEDFLERRLQTQ 384
E D R+ + L+ +L + L QM L V G L F RRL T
Sbjct: 65 EDDSFRIKMTDNLMEKLYVFKMMYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATV 124
Query: 385 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFS 525
+ + + + A I Q HIRV VVNIP++ V + HI ++
Sbjct: 125 LVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 49.6 bits (113), Expect = 5e-05
Identities = 29/123 (23%), Positives = 60/123 (48%)
Frame = +1
Query: 124 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 303
++++ IG +GL+ K E +A+ + +E+ L ++DP + + L +L +GV
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 304 LDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 483
+D KQ ++ + F RR + K A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 484 FIV 492
I+
Sbjct: 147 LII 149
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 49.6 bits (113), Expect = 5e-05
Identities = 37/103 (35%), Positives = 54/103 (52%)
Frame = +1
Query: 226 LTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLA 405
+ L+EK R G L R +R +L+ + K G + LERRL VF+AG A
Sbjct: 51 IKLQEKQKLRFNYG--LSERQLRHLMLNAR--KSTEPTGETLLQLLERRLDNVVFRAGFA 106
Query: 406 KSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 534
++ AR L+ RH+R+ + VNIPS +RL+ G I +S
Sbjct: 107 PTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEITIKPES 147
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 49.2 bits (112), Expect = 7e-05
Identities = 27/88 (30%), Positives = 45/88 (51%)
Frame = +1
Query: 232 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKS 411
L+EK R F N ++ V K +G + LERRL +++AG S
Sbjct: 91 LKEKQKLRKFYANVTEKQFYNYYV---KAKSFKGKIGDNLIKMLERRLDIIIYRAGFVNS 147
Query: 412 IHHARILIRQRHIRVRKQVVNIPSFIVR 495
I+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 148 IYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 48.8 bits (111), Expect = 9e-05
Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 2/106 (1%)
Frame = +1
Query: 181 VKYT-LAR-IRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIE 354
+KY L+R +R A ++ L+ KDP R + +L++L +G++ KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 355 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
F RRL + K +A+++ A ++ HIRV ++V P+F+V
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 48.8 bits (111), Expect = 9e-05
Identities = 32/96 (33%), Positives = 49/96 (51%)
Frame = +1
Query: 199 RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQ 378
R RK + + L+EK + G +L R R + + K + G + F+E RL
Sbjct: 41 RRRKQSEYGIQLQEKQKAKYTYG--ILERQFR-NIFHQASRKKG-ITGENLLKFIEARLD 96
Query: 379 TQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 97 NTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 48.8 bits (111), Expect = 9e-05
Identities = 33/118 (27%), Positives = 55/118 (46%)
Frame = +1
Query: 139 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 318
+ +YG+ ++RE+ + T+ +IR L L + + R+ L R L +GV+D Q
Sbjct: 32 MNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVVDNAQ 91
Query: 319 MKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
L + L L RRL + K + + I ++Q H+RV VV P+ V
Sbjct: 92 ASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPALHV 149
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 48.4 bits (110), Expect = 1e-04
Identities = 33/97 (34%), Positives = 51/97 (52%)
Frame = +1
Query: 208 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQV 387
K E T + K F N + ++ +I +E KL V GL + ++LERRL+ V
Sbjct: 38 KKPTEYATQLREKQKAKFIYNVMEKQFRKI--YEEAARKLG-VTGLTLIEYLERRLENVV 94
Query: 388 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 498
++ G AK+ AR ++ HI V + VNI SF V++
Sbjct: 95 YRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKV 131
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 47.2 bits (107), Expect = 3e-04
Identities = 38/118 (32%), Positives = 55/118 (46%)
Frame = +1
Query: 196 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRL 375
AR +K + + L EK + G +L R+ EK V G + LERRL
Sbjct: 46 ARFKKVSDYAVQLREKQKVKSMYG--VLEAQFRLTF--EKAEAQKGVAGENLLILLERRL 101
Query: 376 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGG 549
VF+AG A S AR ++R +HI + + V+IPS+ ++ G I KS G
Sbjct: 102 DNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDVISLREKSRANAG 157
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 46.8 bits (106), Expect = 4e-04
Identities = 31/97 (31%), Positives = 50/97 (51%)
Frame = +1
Query: 205 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQ 384
RK + L L EK + G +L + R KQM+ + G + LE RL
Sbjct: 21 RKMSEYGLQLREKQKAKFIYG--VLEKPFRNYYAKAKQME--GMTGENLMRILESRLDNV 76
Query: 385 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
+F+ GLA++ AR ++ +H+ V + VNIPS++V+
Sbjct: 77 IFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLVK 113
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 46.0 bits (104), Expect = 6e-04
Identities = 21/30 (70%), Positives = 23/30 (76%)
Frame = +1
Query: 478 PSFIVRLDSGKHIDFSLKSPFGGGRPXRVK 567
PSF+VR+DS K D SL SP GGGRP RVK
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVK 53
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 8e-04
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +1
Query: 313 KQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 493 R 495
+
Sbjct: 152 K 152
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 44.8 bits (101), Expect = 0.001
Identities = 30/119 (25%), Positives = 54/119 (45%)
Frame = +1
Query: 136 IIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEK 315
I+ + + ++ E + + +RK + L L + D R+ + RL +GV+
Sbjct: 32 IMARFHIHDESEFEAYEKAVLNLRKLSFLLQKLPKDDAFRMVLTKRICDRLYDLGVIILP 91
Query: 316 QMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
+ L + + DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 92 EKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = +1
Query: 334 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 513
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 514 IDFSLKS 534
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 44.4 bits (100), Expect = 0.002
Identities = 30/94 (31%), Positives = 48/94 (51%)
Frame = +1
Query: 205 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQ 384
RK ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 35 RKISQYRIRLEEKQKLRFHYGLTERQLLKYVRIARKAKGSTGQVL-LQL---LEMRLDNT 90
Query: 385 VFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
+F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 91 IFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 44.0 bits (99), Expect = 0.002
Identities = 36/101 (35%), Positives = 48/101 (47%)
Frame = +1
Query: 196 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRL 375
AR R+ + L L EK R G L R+ RI EK + G + LERRL
Sbjct: 41 ARRRQVSDYGLQLLEKQKARYVYG-VLERQFRRIF---EKAQRFPGETGAYLFILLERRL 96
Query: 376 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 498
V++ G A + AR L+ HI V + NIPS+ VR+
Sbjct: 97 DNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYTVRV 137
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 44.0 bits (99), Expect = 0.002
Identities = 28/131 (21%), Positives = 61/131 (46%)
Frame = +1
Query: 133 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDE 312
+++G Y L N E + + +I++ L + +D R+ + R+ ++G+++
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIET 90
Query: 313 KQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
Q L + + +RRL + + I A L+RQ H+R+ VV P+ +V
Sbjct: 91 PQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGPDVVTNPATLV 148
Query: 493 RLDSGKHIDFS 525
+ +I+++
Sbjct: 149 SKEMEDYINWA 159
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 44.0 bits (99), Expect = 0.002
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Frame = +1
Query: 298 GVLDEKQMKLXYVLGLKIED--------FLERRLQTQVFKAGLAKSIHHARILIRQRHIR 453
G L EKQ K + + K ++ +LERRL V++ G A + AR L+ H+
Sbjct: 67 GGLREKQFKKYFDMASKSKENTGEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVL 126
Query: 454 VRKQVVNIPSFIVRLDSGKHIDFSLKS 534
V + VNIPS++V + G I+ KS
Sbjct: 127 VNGKKVNIPSYLV--EPGDVIEIKEKS 151
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 43.6 bits (98), Expect = 0.003
Identities = 43/130 (33%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Frame = +1
Query: 115 RLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEG--NALLRRL 288
RL EL +G+ G +R ++ L R RK + L LEEK R G RRL
Sbjct: 15 RLLTELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYGLREEQFRRL 73
Query: 289 VRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 468
+ +K +V L + LE+RL VF+ G A SI AR L+ + V +
Sbjct: 74 INKA---KKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKK 128
Query: 469 VNIPSFIVRL 498
VNI S I+++
Sbjct: 129 VNIGSQIIKV 138
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 42.7 bits (96), Expect = 0.006
Identities = 33/97 (34%), Positives = 48/97 (49%)
Frame = +1
Query: 196 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRL 375
A +K + + LEEK RL G + R+++R K + GL + LE RL
Sbjct: 39 AERKKKSEYAIRLEEKQKVRLNYGVSE-RQMLRYM---RKARRSKGSTGLALLQMLEMRL 94
Query: 376 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 95 DCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 42.3 bits (95), Expect = 0.008
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Frame = +1
Query: 163 KREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVL 339
KRE + + TLA + R+ A + L E DP R +L + G++ L +
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDT-LERIG 98
Query: 340 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 519
+ F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I
Sbjct: 99 KVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMIT 158
Query: 520 FSLKS 534
++ S
Sbjct: 159 WTKAS 163
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.008
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 534
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.008
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +1
Query: 310 EKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.013
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = +1
Query: 310 EKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 489
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 490 VR 495
VR
Sbjct: 137 VR 138
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 41.5 bits (93), Expect = 0.013
Identities = 31/93 (33%), Positives = 48/93 (51%)
Frame = +1
Query: 208 KAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQV 387
K +R + LEEK R G + L + + + VL L++ LE RL +
Sbjct: 26 KKSRYRIRLEEKQKVRFHYGLTDRQLLQYVRIARRAKGSTGQVL-LQL---LEMRLDNIL 81
Query: 388 FKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 82 FRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 41.5 bits (93), Expect = 0.013
Identities = 28/98 (28%), Positives = 47/98 (47%)
Frame = +1
Query: 196 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRL 375
+R K ++ + LEEK R G + L + + K + +G + LE L
Sbjct: 157 SRSGKRSQYRIRLEEKQKLRFHYGLTERQLLNYVHIA----RKAKWAIGRVLLQLLEMHL 212
Query: 376 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 489
+F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 213 DNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 41.1 bits (92), Expect = 0.018
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 304 LDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 483
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 484 F 486
+
Sbjct: 95 Y 95
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 41.1 bits (92), Expect = 0.018
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 103 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 228
+ K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 130 YGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 41.1 bits (92), Expect = 0.018
Identities = 31/121 (25%), Positives = 56/121 (46%)
Frame = +1
Query: 139 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQ 318
I +Y L ++ + R + IR+ L L R+ +L +L +G+++EK
Sbjct: 79 ITKYHLEDREDYRRYLRLVGLIRQLLTHLRYLPADSKIRIQITQQILDKLYAMGLINEK- 137
Query: 319 MKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 498
+ L V + +E F +RRL T + +A + A + H+RV + P+F+V
Sbjct: 138 LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVRVGTSQIRDPAFLVPR 197
Query: 499 D 501
D
Sbjct: 198 D 198
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.023
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = +1
Query: 340 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 519
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 520 FSLKS 534
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.031
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +1
Query: 334 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.041
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 355 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 498
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.041
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 340 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 519
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 520 F 522
F
Sbjct: 147 F 147
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 39.9 bits (89), Expect = 0.041
Identities = 30/97 (30%), Positives = 50/97 (51%)
Frame = +1
Query: 196 ARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRL 375
+R K ++ + LEEK R G + L + + + + VL L++ LE RL
Sbjct: 36 SRSVKKSQYRIRLEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTGQVL-LQL---LEMRL 91
Query: 376 QTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
+F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 92 DNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.5 bits (88), Expect = 0.054
Identities = 36/117 (30%), Positives = 54/117 (46%)
Frame = +1
Query: 145 EYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMK 324
E G +K+E R R RK + + L EK + G +L + G + K K
Sbjct: 21 ELGYSSKKESIRQP---KRRRKESEYGMQLREKQKVKFIYG--VLEKQFH-GYFN-KARK 73
Query: 325 LXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
+ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V+
Sbjct: 74 MNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRVK 130
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 39.5 bits (88), Expect = 0.054
Identities = 32/138 (23%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Frame = +1
Query: 106 EKARLDQELKIIGEYGLRNKREVWRVKYTLA-RIRKAARELLTLEEKDPKRLFEGNALLR 282
++ + DQ+LK Y + + + + + + +I + + + K + F N L
Sbjct: 54 KRGKRDQQLKTT--YTKKKLKRILSLLFRIGGKIYRKKIKKKKINLKKQQEPFTQNLTLH 111
Query: 283 RLVRIGVLDEK--QMKLXY--VLGLK--IEDFLERRLQTQVFKAGLAKSIHHARILIRQR 444
RL R L+ K Q KL Y G + I LE+R+ + ++G +S++ AR +I +
Sbjct: 112 RLFRKFYLNLKLKQFKLLYKKYKGNEKVIIQQLEKRVDMVLLRSGFVRSLYEARQIINHK 171
Query: 445 HIRVRKQVVNIPSFIVRL 498
H+ V ++ ++P +++ +
Sbjct: 172 HLLVNGKIASLPGYMINV 189
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.071
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +1
Query: 304 LDEKQMK--LXYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 468
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 469 VNIPSFIV 492
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.16
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.16
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = +1
Query: 310 EKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 489
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 490 V 492
V
Sbjct: 136 V 136
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.16
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 340 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.22
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 322 KLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 501
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 502 S 504
S
Sbjct: 142 S 142
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.29
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.29
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 334 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 36.7 bits (81), Expect = 0.38
Identities = 24/85 (28%), Positives = 43/85 (50%)
Frame = +1
Query: 232 LEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKS 411
L++++ ++ +L + R G DE + G ++ LE RL V++ G A S
Sbjct: 55 LQKREKQKCARIYGVLEKQFR-GYYDEANRRAGKT-GDELLKILESRLDNVVYRGGFAPS 112
Query: 412 IHHARILIRQRHIRVRKQVVNIPSF 486
AR +R H++V + V+IPS+
Sbjct: 113 RDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.7 bits (81), Expect = 0.38
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +1
Query: 280 RRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 459
R+LVR V K++K G + LE RL VF+ +A +I AR LI HI +
Sbjct: 85 RQLVRY-VQQAKKIKGS--TGRVLLRLLEMRLDNIVFRLHMAPTIKAARQLISHGHILIN 141
Query: 460 KQVVNIPSF 486
K+ V IPS+
Sbjct: 142 KKKVTIPSY 150
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 36.7 bits (81), Expect = 0.38
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 199 RIRKAARELLTLEEKDPKRLFEG--NALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERR 372
+ RK + + L+EK + + G N+ L R R ++ K GL + LE R
Sbjct: 39 KTRKLSEFAVQLQEKQKLQYYYGITNSQLARYFR----QARRSKSS--TGLALLTMLETR 92
Query: 373 LQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
L V++AG A ++ AR L+ H++V + V I S+
Sbjct: 93 LDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.50
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +1
Query: 340 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 495
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.50
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.66
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 475 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 371
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.5
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 340 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 486
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.5
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 343 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 522
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 523 S 525
+
Sbjct: 135 A 135
>UniRef50_Q01688 Cluster: Putative 40S ribosomal protein S4-like;
n=21; Eukaryota|Rep: Putative 40S ribosomal protein
S4-like - Pneumocystis carinii
Length = 169
Score = 34.7 bits (76), Expect = 1.5
Identities = 23/123 (18%), Positives = 51/123 (41%)
Frame = +1
Query: 124 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 303
+++ +I Y + + + ++ + + A +L LE D LL +L + +
Sbjct: 28 RDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMAL 87
Query: 304 LDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 483
L L + F RRL + + + +++ + + H+RV +V+ P+
Sbjct: 88 LTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPA 147
Query: 484 FIV 492
F V
Sbjct: 148 FFV 150
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.0
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 402 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 497
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 34.3 bits (75), Expect = 2.0
Identities = 19/60 (31%), Positives = 33/60 (55%)
Frame = +1
Query: 106 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRR 285
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L +
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAILEQ 671
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.3 bits (75), Expect = 2.0
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 522
+E+RL ++++G K+I AR R I V +V IPS I L+SG I +
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISY 251
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 2.0
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 534
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 2.7
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 349 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 510
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 33.5 bits (73), Expect = 3.5
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Frame = +1
Query: 232 LEEKDPKRLFEGNALL-RRLVRI-GVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLA 405
L E+D + + G L+ ++LV I +D + + + ++ RRL T + K A
Sbjct: 37 LVERDDYKKYNGICLMVQKLVNIIKQMDPRDPYRAEMTDMLLDKL--RRLATVMVKLKFA 94
Query: 406 KSIHHARILIRQRHIRVRKQVVNIPSFIV 492
+ + A I+Q H+RV + V P+F+V
Sbjct: 95 EHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_Q4SBP2 Cluster: Chromosome 18 SCAF14665, whole genome
shotgun sequence; n=2; Tetraodontidae|Rep: Chromosome 18
SCAF14665, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 785
Score = 33.1 bits (72), Expect = 4.7
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 277 LRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRLQTQVFKAGLAKSIHHAR--ILIRQRHI 450
++++V+I +L + K V G + + +R L L + + H R L ++
Sbjct: 385 MKKMVQIPMLRPWEAKNTKVFGASLSELQDRGLVEDGVPVLLRRLVEHLRKHALQQEGLF 444
Query: 451 RVRKQVVNIPSFIVRLDSGKHIDFS 525
RV V + + RL+SG+H+D S
Sbjct: 445 RVNGNVRAVGTLKQRLESGEHVDLS 469
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 4.7
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 361 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 492
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q5GW70 Cluster: Putative uncharacterized protein; n=1;
Xanthomonas oryzae pv. oryzae|Rep: Putative
uncharacterized protein - Xanthomonas oryzae pv. oryzae
Length = 223
Score = 32.3 bits (70), Expect = 8.1
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Frame = +1
Query: 247 PKRLFEGNALLRRLVRIGVLDEKQMKLXYVLGLKIEDFLERRL--QTQVFKAGLAKSIHH 420
P+ + + A + +VR GV D ++ + G F+ L +T++FKAG+A+S
Sbjct: 125 PQLIADAQAAVDEVVRRGVTDRARIAIG---GHSYGAFMTANLLARTRLFKAGIARSGMS 181
Query: 421 A---RILIRQRHIRVRKQVVNIPSFIVRLDSGKH 513
A R+L R R RKQ V + IV G H
Sbjct: 182 AIPRRLLCRPSVDRRRKQCVANATRIVASHIGAH 215
>UniRef50_A4EAB5 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 382
Score = 32.3 bits (70), Expect = 8.1
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +1
Query: 163 KREVWRVKYT---LARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXY 333
+R W+V A + R T+E KD + A + RLVRI D+K+ +
Sbjct: 162 QRRGWKVTINDCPAAEVIGIDRATFTVEGKDAFGMLRAEAGVHRLVRISPTDDKRRRQTT 221
Query: 334 VLGLKIEDFLERRLQTQVFKAGLAKSIHHA 423
G+++ L + ++ + ++HA
Sbjct: 222 FAGVEVIPVLPDDIDIEISPDDIRVDVYHA 251
>UniRef50_Q584A6 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 426
Score = 32.3 bits (70), Expect = 8.1
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +1
Query: 220 ELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQM--KLXYVLGLKIEDFLERRLQTQVFK 393
E+L L E +P+++ E A L ++D QM K YV ++ +ERR T V
Sbjct: 37 EILRLAEGEPEKIMEEPANLT-----SIIDRLQMFVKATYVKDSLYKEAMERRKGT-VNN 90
Query: 394 AGLAK-SIHHARILIRQR 444
+G AK S+H A +IR R
Sbjct: 91 SGAAKMSMHRANDIIRWR 108
>UniRef50_A0BWU2 Cluster: Chromosome undetermined scaffold_133,
whole genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_133,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 75
Score = 32.3 bits (70), Expect = 8.1
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Frame = +1
Query: 205 RKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLXYVLG--------LKIEDF 360
R+ R+L +E+ KRL L RIG L E++MKL VLG +KI +F
Sbjct: 4 RQQTRKLYAKDEQQQKRL------QTILTRIGSLKEERMKLILVLGGSSKLNKQMKILEF 57
Query: 361 LERRLQTQ 384
E+ +Q+Q
Sbjct: 58 FEKEIQSQ 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 567,753,900
Number of Sequences: 1657284
Number of extensions: 11352655
Number of successful extensions: 31917
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 30910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31890
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38321472724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -