Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C01
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   4.1  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   7.1  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   9.4  

>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -2

Query: 156 AACLY*SNIEVILEKTVRITTPTTANSNYSSVINITLYLSTILN 25
           ++C   S    +L+   RIT P    SN  S++ +  YL+ ++N
Sbjct: 304 SSCALVSGATGLLQGLTRITFPYIDLSNVESLVKLPGYLAGVMN 347


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +1

Query: 88  RRCSYTNCFFQNDF 129
           R+C   NCFF +DF
Sbjct: 20  RKCQSRNCFFSHDF 33


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/72 (26%), Positives = 30/72 (41%)
 Frame = +2

Query: 233 NVPMFTKQKMNLNPSDLITHAAVSSDNLXVAMANGKLFXMDIRNPDSXQEIHYSKYCQPT 412
           N+P    QK N    DLI     + +NL +  ++     + I   D   E+H SK  +  
Sbjct: 338 NIPTLLDQKHNW--LDLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKAK 395

Query: 413 SKLSGLFLDPLG 448
           + L   F +  G
Sbjct: 396 TALQHEFFNACG 407


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,580
Number of Sequences: 5004
Number of extensions: 47120
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)