Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C01
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   7e-10
SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05)         31   1.1  
SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)                  29   2.5  
SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             28   7.5  
SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_31101| Best HMM Match : Collagen (HMM E-Value=0.14)                 27   9.9  

>SB_44567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 759

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 7/150 (4%)
 Frame = +2

Query: 122 MTSILDQYKQAAQAS-------YRTKPPAEPMISSGYINMQLEXNVPMFTKQKMNLNPSD 280
           M SILDQY+ AA          + T    EP I++G++ ++ E  +P+F +QK+N  P  
Sbjct: 1   MASILDQYELAASRGAVDSLNPFLTPDTVEP-ITTGFVELKTEDEIPIFRRQKINFRPPS 59

Query: 281 LITHAAVSSDNLXVAMANGKLFXMDIRNPDSXQEIHYSKYCQPTSKLSGLFLDPLGCHLL 460
            +    VS++ + V ++   +  +D+ N      +   K  +    +  +F+DP   HL+
Sbjct: 60  NMVDLVVSNNTVAVGLSTNVIMRIDLANTSEIDSVEVCK--RLDDAIHRIFIDPTARHLI 117

Query: 461 MSFSSKTKDGCPELXYIHQKSSKLKFVSKI 550
           +   S+      E  Y+ + S K K ++K+
Sbjct: 118 VCMKSQ------ESYYLARNSKKPKPMTKM 141


>SB_41067| Best HMM Match : Ribosomal_L17 (HMM E-Value=1.7e-05)
          Length = 236

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +2

Query: 164 SYRTKPPAE-PMISSGYINMQLEXNVPMFTKQKMNLNPSDLITHAAVSSDNLXVAMANGK 340
           S R+KPP +  MI  G+I  + E    M TK+ +N     ++   +V S    VA    +
Sbjct: 86  SQRSKPPPDLDMIEDGFILSESEAREKMITKKIVNRRSKKVVVLPSVLSKEEYVARCREE 145

Query: 341 LFXMDIRNPDSXQEIH 388
              M + + D   +++
Sbjct: 146 ASNMVMGDQDVLDKLY 161


>SB_7441| Best HMM Match : Collagen (HMM E-Value=0.05)
          Length = 510

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 521 SSKLKFVSKIPNYEITEVGWNFENTSNNMT 610
           +  + F +KI  +E T+ G+NF  T +N+T
Sbjct: 197 TKNIPFATKIGKFEPTDTGYNFTQTLSNVT 226


>SB_22639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 956

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 119 KMTSILDQYKQAAQASYRTKPPAEPMI 199
           +M SILD  +Q A+ S   K P+EP I
Sbjct: 84  QMASILDSLRQEAECSLCHKTPSEPKI 110


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +2

Query: 413 SKLSGLFLDPLGCHLLMSFSSKTKDGCPELXYIHQKSSKLKFVSKIPN 556
           S ++G         + M+   KTKD    +  IH  S KLK  S I N
Sbjct: 351 SSVNGFGFKESDLDICMTLDGKTKDDVDPIKVIHDLSKKLKQHSDIRN 398


>SB_53950| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 541

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +2

Query: 383 IHYSKYCQPTSKLSGLFLDPLGCHLLMSFSSKTKDGCPELXYIHQKSSKLKF 538
           I Y+  C  T K   +F D LGC    +     +DG      +HQK   + F
Sbjct: 291 ISYNDQCYLTEKYQDVFSDELGCLKGYAAQLHVRDGATP---VHQKHRTVPF 339


>SB_31101| Best HMM Match : Collagen (HMM E-Value=0.14)
          Length = 417

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 536 FVSKIPNYEITEVGWNFENTSNNMT 610
           F ++I  +EI + G+NF  T +N+T
Sbjct: 216 FATEIGKFEINDTGFNFTQTLSNVT 240


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,644,652
Number of Sequences: 59808
Number of extensions: 319467
Number of successful extensions: 640
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)