Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_C01
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    37   0.011
AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical...    29   2.8  
Z73422-6|CAH04641.1|  316|Caenorhabditis elegans Hypothetical pr...    27   8.7  
Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    27   8.7  
AF016683-8|AAM97998.1|  480|Caenorhabditis elegans Hypothetical ...    27   8.7  

>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical
           protein W06B4.3 protein.
          Length = 962

 Score = 37.1 bits (82), Expect = 0.011
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 506 YIHQKSSKLKFVSKIPNYEITEVGWNFE-NTSNNMTGXILLGTSKGHLL 649
           YIH KS+    + K+    +T VGWN + +   + TG ILLGT++G ++
Sbjct: 34  YIHLKSNAFHHLKKL-RCVVTAVGWNPDYSKETDTTGPILLGTAQGSII 81


>AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical
           protein F28A10.5 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
 Frame = +2

Query: 197 ISSGYINMQLEX-NVPMFTKQKMNLNPSDLIT-HAA 298
           I+S  IN +LE  ++P FT+Q   LNP+ L T H+A
Sbjct: 27  ITSNQINRKLEQCSLPSFTRQARVLNPAALYTSHSA 62


>Z73422-6|CAH04641.1|  316|Caenorhabditis elegans Hypothetical
           protein B0564.11 protein.
          Length = 316

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 401 CQPTSKLSGLFLDPLGCHLL 460
           C P S   G+ L P GCH++
Sbjct: 241 CSPNSSTMGIVLIPCGCHVM 260


>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 212 INMQLEXNVPMFTKQKMNLNPSDLITHAAVSSDNLXVAM 328
           I  +LE  V   TK   +LNPS L+T      D L V +
Sbjct: 255 IIQKLEDEVDYLTKNLESLNPSQLVTSLENKDDYLLVTV 293


>AF016683-8|AAM97998.1|  480|Caenorhabditis elegans Hypothetical
           protein K09F6.10 protein.
          Length = 480

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
 Frame = +1

Query: 46  KCNVY----HRAIITVRCRRCSYTNC 111
           KCN Y    H      +CRRC  TNC
Sbjct: 335 KCNQYSGRRHYQTCGAKCRRCGVTNC 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,454,462
Number of Sequences: 27780
Number of extensions: 255973
Number of successful extensions: 614
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)