Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B24
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   1.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.6  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   4.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.9  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 406 VSFSTTDSRSKHLHNVKSVCGKLVRAFKSI 317
           VS  T D     LH V+SVC K +   + I
Sbjct: 14  VSAMTLDELKSGLHTVQSVCMKEIGTAQQI 43


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 641 LXNPVLQCYIINTS*QICQVVFVNSLKCDTNHMTDKLSD*VMEATD 504
           + +P L  + +NTS Q+ QVV  + +  + +     L   V++A D
Sbjct: 153 MCSPKLHVFDLNTSHQLKQVVMPHDIAVNASTGNGGLVSLVVQAMD 198


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 48 KKEXNPLPRE*IFC 7
          KK   PLP E +FC
Sbjct: 30 KKNKKPLPTECVFC 43


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +3

Query: 180 PANLEILXRYVEMQSRXNTYDLGANLAVLKLYQFNPEKFNAXITCQIL 323
           PA+ +I  R +++     TY+   ++AV    + NP  F   ++  IL
Sbjct: 87  PAHRKIAARLIDIFMGMRTYEDFLSVAVYCRDRLNPNLFIYALSVAIL 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,820
Number of Sequences: 438
Number of extensions: 3659
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)