Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B23
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149           29   3.1  
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153     28   5.4  
07_01_0836 - 6795224-6795263,6796027-6796128,6796264-6796401,679...    27   9.5  
07_01_0482 + 3627980-3628270,3628785-3629012,3629116-3629237,362...    27   9.5  

>05_02_0059 + 6230139-6230199,6231716-6232506,6233108-6233149
          Length = 297

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 68  PFKQLKRWIEVKKRSTQRK 12
           P++QLKRW +V  R+ QRK
Sbjct: 238 PWRQLKRWRKVASRAVQRK 256


>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
          Length = 1112

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 140 NYFLRVAFTIGIGR---LFHKKCGINDSTTIYGFCTTQDVDIFLRHMNNARYVRELXFAR 310
           +++LRV F IG+ R     H++C    ST I   C  +  +I L +   A+ + +   A+
Sbjct: 605 SWYLRVQFAIGVARGLLYLHEEC----STQII-HCDIKPQNILLDNNLTAK-ISDFGLAK 658

Query: 311 FHFYDRTGIYTNIKAVDGH 367
               D+T  +T I+   G+
Sbjct: 659 LLRMDQTQTHTGIRGTRGY 677


>07_01_0836 -
           6795224-6795263,6796027-6796128,6796264-6796401,
           6796790-6796932,6797388-6797607,6798087-6798208,
           6798317-6798544,6798993-6799355
          Length = 451

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 487 KLLLDEKSFILPVNQLSFNFVWAENW 410
           K ++D K+F  P+NQL  N +W  +W
Sbjct: 191 KEIIDSKNFSSPLNQLQ-NRIWLMHW 215


>07_01_0482 +
           3627980-3628270,3628785-3629012,3629116-3629237,
           3629747-3629966,3630434-3630576,3631004-3631141,
           3631275-3631380
          Length = 415

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 487 KLLLDEKSFILPVNQLSFNFVWAENW 410
           K ++D K+F  P+NQL  N +W  +W
Sbjct: 167 KEIIDSKNFSSPLNQLQ-NRIWLMHW 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,996,422
Number of Sequences: 37544
Number of extensions: 284636
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)