Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B22
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          145   2e-35
12_01_0323 - 2459854-2460306                                          144   4e-35
11_01_0317 - 2365493-2365786,2365825-2365953                          108   2e-24
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   7.2  
06_03_1265 + 28847782-28849803                                         27   9.6  
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    27   9.6  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  145 bits (352), Expect = 2e-35
 Identities = 69/103 (66%), Positives = 88/103 (85%)
 Frame = +1

Query: 157 SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 336
           S ELR K+NV+S+PIRKDDEVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35  SSELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 337 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKXKGKY 465
             VGIHPSK V+ KLK++KDRKAILDR+A+GR  A  K KGK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKARGR--AADKAKGKF 134



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +3

Query: 84  RRKNRKRHFSAPSHIRRVLMSSPL 155
           RRK RK HF+APS +RRVLMS+ L
Sbjct: 11  RRKCRKAHFTAPSSVRRVLMSAAL 34


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  144 bits (349), Expect = 4e-35
 Identities = 69/103 (66%), Positives = 87/103 (84%)
 Frame = +1

Query: 157 SKELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGAT 336
           S ELR K+NV+S+PIRKDDEVQVVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T
Sbjct: 35  STELRHKYNVRSIPIRKDDEVQVVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGST 93

Query: 337 AYVGIHPSKCVIVKLKMNKDRKAILDRRAKGRLAALGKXKGKY 465
             VGIHPSK V+ KLK++KDRKAILDR+A GR  A  K KGK+
Sbjct: 94  VNVGIHPSKVVVTKLKLDKDRKAILDRKASGR--AADKAKGKF 134



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +3

Query: 84  RRKNRKRHFSAPSHIRRVLMSSPL 155
           RRK RK HF+APS +RRVLMS+ L
Sbjct: 11  RRKCRKAHFTAPSSVRRVLMSAAL 34


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  108 bits (260), Expect = 2e-24
 Identities = 52/81 (64%), Positives = 67/81 (82%)
 Frame = +1

Query: 223 VVRGHYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKDRK 402
           VVRG YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KDRK
Sbjct: 44  VVRGSYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKDRK 102

Query: 403 AILDRRAKGRLAALGKXKGKY 465
           AILDR+A GR  A  K KGK+
Sbjct: 103 AILDRKASGR--AADKAKGKF 121



 Score = 37.9 bits (84), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (83%)
 Frame = +3

Query: 84  RRKNRKRHFSAPSHIRRVLMSSPL 155
           RRK RK HF+APS +RRVLMS+ L
Sbjct: 11  RRKCRKAHFTAPSSVRRVLMSAAL 34


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 163  ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 309
            E   KF   + P  K D +Q+V  + + QQ    + V  K+F +YI  +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326


>06_03_1265 + 28847782-28849803
          Length = 673

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 192 GFYIEFLS*FLRAGERTSTLALYVKEH*NASSCFSFLRKSPALLNFI 52
           G ++EF    L   ER   +A++ +    ASSCF+ +     +L+F+
Sbjct: 282 GRHLEFAVRHLLEAERKLCVAVFERRPEAASSCFAEIASRAGILDFL 328


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +1

Query: 193 MPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIE 303
           M +R  D VQV+ G  KG +VG+V ++++    V ++
Sbjct: 93  MHVRIGDTVQVIAGREKG-KVGEVTRLFKHNSTVIVK 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,151
Number of Sequences: 37544
Number of extensions: 263126
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)