Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B21
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002694-1|AAH02694.1|  208|Homo sapiens MED18 protein protein.        96   8e-20
AL353622-1|CAI19132.1|  208|Homo sapiens mediator of RNA polymer...    96   8e-20
AK000052-1|BAA90910.1|  208|Homo sapiens protein ( Homo sapiens ...    96   8e-20
AB107222-1|BAD06869.1|  208|Homo sapiens p28b protein.                 96   8e-20

>BC002694-1|AAH02694.1|  208|Homo sapiens MED18 protein protein.
          Length = 208

 Score = 96.3 bits (229), Expect = 8e-20
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 368 RASVLDSAVEVLLHRLRGLCDNVDAGPXTFDDQEVCFSLRDPNHHQAPPLMLRVRKALDA 547
           + SVLD ++E L+HRLRGLCDN++  P TF D E+ F L+     QA P +LR R+++D 
Sbjct: 24  QGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARRSMDR 78

Query: 548 RDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACS 646
              P+ LRY+GQP++GDKNR  +VR+ +DIA S
Sbjct: 79  AGAPWHLRYLGQPEMGDKNRHALVRNCVDIATS 111


>AL353622-1|CAI19132.1|  208|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 18 homolog (S. cerevisiae)
           protein.
          Length = 208

 Score = 96.3 bits (229), Expect = 8e-20
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 368 RASVLDSAVEVLLHRLRGLCDNVDAGPXTFDDQEVCFSLRDPNHHQAPPLMLRVRKALDA 547
           + SVLD ++E L+HRLRGLCDN++  P TF D E+ F L+     QA P +LR R+++D 
Sbjct: 24  QGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARRSMDR 78

Query: 548 RDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACS 646
              P+ LRY+GQP++GDKNR  +VR+ +DIA S
Sbjct: 79  AGAPWHLRYLGQPEMGDKNRHALVRNCVDIATS 111


>AK000052-1|BAA90910.1|  208|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20045 fis, clone COL00548. ).
          Length = 208

 Score = 96.3 bits (229), Expect = 8e-20
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 368 RASVLDSAVEVLLHRLRGLCDNVDAGPXTFDDQEVCFSLRDPNHHQAPPLMLRVRKALDA 547
           + SVLD ++E L+HRLRGLCDN++  P TF D E+ F L+     QA P +LR R+++D 
Sbjct: 24  QGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARRSMDR 78

Query: 548 RDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACS 646
              P+ LRY+GQP++GDKNR  +VR+ +DIA S
Sbjct: 79  AGAPWHLRYLGQPEMGDKNRHALVRNCVDIATS 111


>AB107222-1|BAD06869.1|  208|Homo sapiens p28b protein.
          Length = 208

 Score = 96.3 bits (229), Expect = 8e-20
 Identities = 47/93 (50%), Positives = 66/93 (70%)
 Frame = +2

Query: 368 RASVLDSAVEVLLHRLRGLCDNVDAGPXTFDDQEVCFSLRDPNHHQAPPLMLRVRKALDA 547
           + SVLD ++E L+HRLRGLCDN++  P TF D E+ F L+     QA P +LR R+++D 
Sbjct: 24  QGSVLDHSLESLIHRLRGLCDNME--PETFLDHEMVFLLKG---QQASPFVLRARRSMDR 78

Query: 548 RDMPFQLRYIGQPDLGDKNRPTVVRSSLDIACS 646
              P+ LRY+GQP++GDKNR  +VR+ +DIA S
Sbjct: 79  AGAPWHLRYLGQPEMGDKNRHALVRNCVDIATS 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,550,169
Number of Sequences: 237096
Number of extensions: 1547405
Number of successful extensions: 2537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2533
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)