Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_B20
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 69 6e-13
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 54 2e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 46 5e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 36 0.007
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 29 0.77
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.4
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.1
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 5.5
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 5.5
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 25 7.2
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 9.5
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 9.5
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 9.5
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 68.9 bits (161), Expect = 6e-13
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Frame = +1
Query: 211 SEELAHESLEWIRMITGEPXNTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMA 390
+ +L E+ EWI N D+ + L+ G +LC++ I+ S+M
Sbjct: 2 TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57
Query: 391 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGXKAGTY--GK-P 558
F MENI+AF+ A+Q+ VP+Q+ FQT DL+ER+N V+ + S A GK
Sbjct: 58 FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYAAKMFPGKVR 117
Query: 559 SIGPKEADXNVRNFSEEQLXAXDXVILXLQYG 654
+GPK A+ R FS +Q + LQYG
Sbjct: 118 GLGPKLAEKKPRVFSAQQQREFREGVNSLQYG 149
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Frame = +1
Query: 229 ESLEWIRMITGEPXNTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 405
E+ +WI G G F + L++G +L L P+ +IK ++ + F+ +
Sbjct: 46 EAKKWIEECLGTDL---GPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102
Query: 406 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 528
NIN FL+ +G+P F+ D++E +NL V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 46.0 bits (104), Expect = 5e-06
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Frame = +1
Query: 226 HESLEWIRMITGEPXNTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 402
HE+ +W+ E N ++D+F + L +G +LC+LA +P + ++ +
Sbjct: 68 HEAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124
Query: 403 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 528
+NAF +G+ F+T DL R N+ V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 35.5 bits (78), Expect = 0.007
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Frame = +1
Query: 265 PXNTSGDMDNFYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFL 423
P NT + F++ KDG +L KL N+ P+ I K+ N + FKC+EN N +
Sbjct: 137 PINT--ETFEFFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVI 194
Query: 424 EAARQLG 444
+A+ +G
Sbjct: 195 NSAKAMG 201
Score = 30.3 bits (65), Expect = 0.25
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Frame = +1
Query: 292 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 444
+F+ L+DG +L + + I PN + KK+N + M FK +EN N ++ + G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 420 PRSRKTVGCTGAGNFSNCRPVGETESQLRRDLLAVTGXKGWNLR 551
P+ + V CTGAG+ V +S D L +TG G L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 364 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 486
++ +S A E + AF+E A+Q G+P E W+
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWD 158
>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.1
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +1
Query: 307 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENI-NAFLEAARQLGVPAQETFQTVDLW 483
LK+ T + L+++IHPN +++ S +N+ N E + L + + VD +
Sbjct: 6 LKENTEIINLSSSIHPNRDSYLDSQSDPLN--QNLYNIETENVKDLNI------EDVDYY 57
Query: 484 ERQNLNSVVICLQSLGXKAGTYGKPSIGPKEADXNVRN 597
E+ L + I +++ TY K S+G N N
Sbjct: 58 EK--LQNFKIVDENIDPGLRTYSKRSVGVNNTFQNPCN 93
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 57 CLHSVHSDFTFYRVCDLFK*FIKLLLVRH 143
CLHSV FT V L++ F++L + H
Sbjct: 244 CLHSVPDAFTNPDVATLYQKFLRLQSLEH 272
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -3
Query: 151 CLPCRTNNNLINYLNKSQTR*KVKSLCTECKQAGGSTDTSES 26
C C NN I LN S+++ KSL ST+T S
Sbjct: 85 CTGCPALNNRIRSLNASKSQSGRKSLSPNPSSVPSSTETKAS 126
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 121 LNCY*FDMANNRATKSGFAAEAQ 189
LN Y +D NN K+GFA A+
Sbjct: 171 LNDYFYDTVNNGVYKTGFATTAE 193
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 175 QILIWWLGCLPCRTNNNL 122
Q+L W CL CR+N+NL
Sbjct: 884 QVLSW--ACLSCRSNDNL 899
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 260 PVIIRIHSKDSWASSSLYLL 201
P IIR H +D W S + LL
Sbjct: 331 PCIIRSHKEDDWVSDIVSLL 350
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 456 LRRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 343
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,702,013
Number of Sequences: 5004
Number of extensions: 55784
Number of successful extensions: 165
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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