Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_B17
(553 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0120 - 957365-957552,957642-957780,957847-957970,958398-95... 120 8e-28
08_01_0119 - 951492-951679,951780-951918,952023-952095,952196-95... 120 8e-28
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009... 106 1e-23
02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416 105 3e-23
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 27 7.5
06_03_1379 - 29709532-29709843,29709951-29710112,29710193-297110... 27 10.0
04_03_0273 - 13742351-13743357,13743617-13743731 27 10.0
>08_01_0120 -
957365-957552,957642-957780,957847-957970,958398-958486
Length = 179
Score = 120 bits (289), Expect = 8e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 291 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVXSRIHRLARYYKTXS 470
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILV SRIHRLARYYK
Sbjct: 113 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 172
Query: 471 VLPPNWK 491
LPP WK
Sbjct: 173 KLPPTWK 179
Score = 65.7 bits (153), Expect = 2e-11
Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 17/77 (22%)
Frame = +2
Query: 110 SALPYRRSVPTWLKLTADDV-----------------KEQIYKLGKKGLTPSQIGVMLRD 238
SALPY+R+ P+WLK A DV +E I K KKG PSQIGV+LRD
Sbjct: 36 SALPYKRTPPSWLKTAASDVGAFSFLSLSRLALFHLVEEMIMKAAKKGQMPSQIGVVLRD 95
Query: 239 SHGVAQVRFVTGKKILR 289
HG+ V+ VTG KILR
Sbjct: 96 QHGIPLVKSVTGSKILR 112
>08_01_0119 -
951492-951679,951780-951918,952023-952095,952196-952218
Length = 140
Score = 120 bits (289), Expect = 8e-28
Identities = 55/67 (82%), Positives = 60/67 (89%)
Frame = +3
Query: 291 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVXSRIHRLARYYKTXS 470
I+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILV SRIHRLARYYK
Sbjct: 74 ILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTK 133
Query: 471 VLPPNWK 491
LPP WK
Sbjct: 134 KLPPTWK 140
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/60 (60%), Positives = 45/60 (75%)
Frame = +2
Query: 110 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 289
SA+PY+R+ P+W+K A DV+E I K KKG PSQIGV+LRD HG+ V+ VTG KILR
Sbjct: 14 SAIPYKRTPPSWVKTAAADVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSVTGSKILR 73
>07_03_0978 +
23099690-23100108,23100530-23100564,23100868-23100926,
23101269-23101310,23102003-23102065,23102172-23102253,
23102570-23102609,23102657-23102753
Length = 278
Score = 106 bits (255), Expect = 1e-23
Identities = 47/67 (70%), Positives = 58/67 (86%)
Frame = +3
Query: 291 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVXSRIHRLARYYKTXS 470
++K+ GLAP++PEDLY+LIKKAVAMRKHLERNRKDKD+KFRLILV SR+HRL RYY+
Sbjct: 74 VLKSRGLAPEVPEDLYFLIKKAVAMRKHLERNRKDKDTKFRLILVESRVHRLTRYYRLAK 133
Query: 471 VLPPNWK 491
+P +K
Sbjct: 134 KIPAFFK 140
Score = 73.7 bits (173), Expect = 9e-14
Identities = 33/60 (55%), Positives = 43/60 (71%)
Frame = +2
Query: 110 SALPYRRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILR 289
S LPYRR+ P W+K +A +V+E I ++ KKG PSQIG +LRD+H V + VTG KILR
Sbjct: 14 SVLPYRRAAPAWVKTSASEVEEMIVRVAKKGQLPSQIGAILRDAHAVPLAQGVTGGKILR 73
>02_05_0301 - 27687297-27687547,27687637-27687775,27689150-27689416
Length = 218
Score = 105 bits (251), Expect = 3e-23
Identities = 50/64 (78%), Positives = 54/64 (84%)
Frame = +3
Query: 291 IMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVXSRIHRLARYYKTXS 470
I+KA GLAP + EDLY+LIKKAVA+RKHLERNRKDKDS FRLILV SRIHRL RYYK
Sbjct: 131 ILKAHGLAPKILEDLYFLIKKAVAIRKHLERNRKDKDSSFRLILVESRIHRLVRYYKRTK 190
Query: 471 VLPP 482
LPP
Sbjct: 191 KLPP 194
Score = 40.7 bits (91), Expect = 8e-04
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = +2
Query: 164 DVKEQIYKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKIL 286
+V+E I K K G SQIGV+LR HG+ V+ + KIL
Sbjct: 89 EVEEMIMKAAKMGQMSSQIGVVLRHQHGIPLVKSIASSKIL 129
>06_03_0742 +
24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 125 RRSVPTWLKLTADDVKEQIYKLGKKGLTPSQIGVMLRD 238
RRS +++ D +KE + GKK L +++ +L+D
Sbjct: 326 RRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKD 363
>06_03_1379 -
29709532-29709843,29709951-29710112,29710193-29711086,
29712741-29712812,29714106-29714210,29714820-29714900
Length = 541
Score = 27.1 bits (57), Expect = 10.0
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 318 DLPEDLYYLIKK-AVAMRKHLERNRKDKDSKFRL 416
DLPE L++ AVA R LE++R D+ FR+
Sbjct: 24 DLPEQQPQLMENVAVAKRSRLEQHRTLSDNSFRV 57
>04_03_0273 - 13742351-13743357,13743617-13743731
Length = 373
Score = 27.1 bits (57), Expect = 10.0
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = +2
Query: 29 CRCQIGDLVKSRKHGSYARSWLRVSPXSALPYRRSVPTWLKLTADDVKEQIYKLGKKGLT 208
CRC ++H + WLR +P S Y + T L + +E I +LG +
Sbjct: 35 CRCMCKKTTTEKRHMYISDEWLRANP-SVTAY---MSTSLNVRQQVAEEGIPRLGAEAAC 90
Query: 209 PSQIGVMLRDSHGVAQVRFVT 271
+ IG + + + V F T
Sbjct: 91 -NAIGNWGKPASSITHVVFAT 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,893
Number of Sequences: 37544
Number of extensions: 261131
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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