Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_B15
(655 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1220 - 24966169-24966327,24966421-24966552,24966639-249666... 329 1e-90
07_01_0214 + 1595917-1596526,1597127-1597140,1598414-1598743,159... 29 3.2
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 28 5.6
11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090 28 7.5
08_01_0346 - 3063440-3064189 28 7.5
05_05_0311 - 24004380-24004440,24004685-24004756,24004875-240049... 28 7.5
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 27 9.9
>07_03_1220 -
24966169-24966327,24966421-24966552,24966639-24966693,
24967496-24967667,24967771-24967918,24968015-24968050
Length = 233
Score = 329 bits (808), Expect = 1e-90
Identities = 162/202 (80%), Positives = 173/202 (85%)
Frame = +1
Query: 46 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 225
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 7 ISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 66
Query: 226 RIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLR 405
RIRELTSVVQKRFN PE V LYAEKV RGLCAIAQAESL YKL+GGLAVRRACYGVLR
Sbjct: 67 RIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 126
Query: 406 FIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQXVLXI 585
F+MESGA+GCEV+VSGKLR QRAKSMKF G MI SG P N Y+++A RHVLL Q VL I
Sbjct: 127 FVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVLGI 186
Query: 586 KVKIMLPWDQQGKNGPXKPQPD 651
KVKIML WD +GK GP P PD
Sbjct: 187 KVKIMLDWDPKGKQGPMTPLPD 208
>07_01_0214 +
1595917-1596526,1597127-1597140,1598414-1598743,
1598853-1598963,1599113-1599269,1603366-1603619,
1603762-1603960,1604341-1604498
Length = 610
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/35 (45%), Positives = 16/35 (45%)
Frame = -1
Query: 487 TSLIWHVDHAACQIQQLHNHGHQIP**NGEHHSKH 383
T L H AA Q H HGH G HHSKH
Sbjct: 247 TPLALHQAAAAAGPSQYHGHGHPHH-GGGHHHSKH 280
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 28.3 bits (60), Expect = 5.6
Identities = 29/177 (16%), Positives = 71/177 (40%), Gaps = 2/177 (1%)
Frame = +1
Query: 76 GVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 255
GV+ E+ + +++AE+ V + + ++ ++ + +RE+ +++
Sbjct: 325 GVYLGEIARLVFQKMAEES-DIFGTAVDGLSTPFVLSTPNLAAIREDDSPDLREVGKILE 383
Query: 256 KRFNIPEQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRACYGVLRFIMESGARG- 432
+ +P+ V L K+ R +I A R A ++ + + G G
Sbjct: 384 EHLKLPD--VPLKTRKLVAR-----------VSDIITRRAARLAAAAIVAILQKIGCDGT 430
Query: 433 -CEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLXQXVLXIKVKIM 600
C +RG R +++ + G + +Y+N A +L + + +++M
Sbjct: 431 LCGSTQVRTMRGVRRRTVVAIEGGLFEGYSVFREYLNEALVEILGEEIAATVSLRVM 487
>11_06_0406 - 23192363-23194911,23195152-23195247,23195622-23196090
Length = 1037
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 517 LQSGS*VHXQTSLIWHVDHAACQIQQLHNHGH 422
+QSG+ LIWH+ + C+I+ H H
Sbjct: 753 IQSGAPRCSHVILIWHIATSLCEIKLAQEHDH 784
>08_01_0346 - 3063440-3064189
Length = 249
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +1
Query: 337 AESLXYKLIGGLAVRRACYGVLR 405
A S L+GG A ACYGVLR
Sbjct: 221 ARSAARVLLGGWAAMAACYGVLR 243
>05_05_0311 -
24004380-24004440,24004685-24004756,24004875-24004946,
24005155-24005298,24005535-24005606,24006057-24006286
Length = 216
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = -2
Query: 177 DLRADGSDPHFHAGVAVLGQLPSEELIEFRLENPISNKFSLL*NIVHGHDCN 22
DL H A +A L QL E+ +E PI +F L N++ CN
Sbjct: 78 DLEEMNLSGHLSADLARLDQLQFMEIASNNIEGPIPPEFGNLENLISLDLCN 129
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/62 (24%), Positives = 30/62 (48%)
Frame = -2
Query: 576 YSLXEKHMSGSSVDVIIARVSRVDHESXYKLH*FGTLTTQLARYNNFTTTGTRFHDETEN 397
+ L + + GS +++ V R D ++ Y+ G ++ +NN +++G HD N
Sbjct: 739 FKLNQVCIDGSRDELLETDVIRQDIKALYQSIDMGLVSEATVCFNNVSSSGLSVHDTGGN 798
Query: 396 TI 391
I
Sbjct: 799 VI 800
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,553,980
Number of Sequences: 37544
Number of extensions: 351149
Number of successful extensions: 883
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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