Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B15
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   320   7e-88
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    31   0.94 
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    31   0.94 
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    30   1.6  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   2.9  
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  320 bits (785), Expect = 7e-88
 Identities = 155/209 (74%), Positives = 176/209 (84%), Gaps = 1/209 (0%)
 Frame = +1

Query: 31  MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 207
           MA N N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 208 LGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLXYKLIGGLAVRRA 387
           LGE+GRRI+ELTSVVQKRF   E SV LYAEKV+ RGLCA+AQ ESL YKL+GGLAVRRA
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 388 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVXGLMIHSGDPCNDYVNTATRHVLLX 567
           CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFV GLMIHSG P NDY+  A RHV L 
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180

Query: 568 QXVLXIKVKIMLPWDQQGKNGPXKPQPDH 654
           Q V+ IKVKIMLP+D +G+NGP    PDH
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDH 209


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical protein
            C05C10.2b protein.
          Length = 1553

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 16   LPVAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 135
            L +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 883  LRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical protein
            C05C10.2a protein.
          Length = 1551

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 16   LPVAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 135
            L +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 883  LRIAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 537  QHCYQTCASXAXSTXNQGQNHVA 605
            Q CY  CAS   ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 537  QHCYQTCASXAXSTXNQGQNHVA 605
            Q CY  CAS   ST  Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 118 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 279
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +1

Query: 118 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 279
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = +1

Query: 196 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVXLYAEKVATR 315
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 194 GHRVCSERKDAESVS*LP*YRSDSTFQSNLXNCMLKRWL 310
           G R C+  KD ++ +       D+ FQ +  NC+ K W+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 184


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 194 GHRVCSERKDAESVS*LP*YRSDSTFQSNLXNCMLKRWL 310
           G R C+  KD ++ +       D+ FQ +  NC+ K W+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,333,842
Number of Sequences: 27780
Number of extensions: 282303
Number of successful extensions: 768
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)