Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B13
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   234   9e-63
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   234   9e-63
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   5.3  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   7.0  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    25   7.0  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   9.2  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.2  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  234 bits (572), Expect = 9e-63
 Identities = 104/161 (64%), Positives = 136/161 (84%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 301
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIA AT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAXIMRNRS 481
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+ ++ +A  MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 482 MARYLSGSXKEILGTAQSVGCTVEGRPPHDLIDDINSGSFD 604
           +A+ LSG+ KEILGTA SVGCTV+G+ PHD+  +I++G  +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIE 161


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  234 bits (572), Expect = 9e-63
 Identities = 104/161 (64%), Positives = 136/161 (84%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 301
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIA AT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAXIMRNRS 481
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+ ++ +A  MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 482 MARYLSGSXKEILGTAQSVGCTVEGRPPHDLIDDINSGSFD 604
           +A+ LSG+ KEILGTA SVGCTV+G+ PHD+  +I++G  +
Sbjct: 121 LAKELSGTVKEILGTAFSVGCTVDGKNPHDVQKEIDNGEIE 161


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/33 (30%), Positives = 22/33 (66%)
 Frame = +2

Query: 5   FQRELPTSLNVQAVALAESNSSIWI*RYYSIKL 103
           F+R + +S N+Q + L   ++++W  R+++I L
Sbjct: 487 FERSIVSSSNLQNLTLENVDNTVWDKRHWAILL 519


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 400 FTVTGRLLKGSDDKGCCR 347
           F VTG +L  S D GC R
Sbjct: 297 FNVTGTILSSSGDDGCVR 314


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -3

Query: 537 TDCAVPRISFXEPERYRAIDLFLMXFAMPTTXSREMLPLCLIFFCFLRSRG 385
           T+ ++        E Y    LFL+ F + TT    +L L +  FC   + G
Sbjct: 2   TEMSIRLFLHLSKEFYDCCGLFLLTFFLLTTCQLRILSLSINAFCVFGASG 52


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 424 RQHLP*XCSRHCEXHEKQINGPVP 495
           + H+   C  HC  H  +   PVP
Sbjct: 162 KTHIDHKCKEHCSCHHDKFPRPVP 185


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 201 DDVAPTSPPTHRKFTILI 148
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,460
Number of Sequences: 5004
Number of extensions: 51078
Number of successful extensions: 113
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)