Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_B13
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 230 8e-61
02_05_0416 + 28791512-28792012 226 1e-59
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414 29 2.4
11_04_0079 - 13284869-13284929,13285518-13285639,13285749-132858... 29 4.1
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 7.2
07_03_0313 + 16620817-16621515 27 9.5
04_04_1574 - 34536744-34537136,34541247-34541405,34541497-345424... 27 9.5
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 9.5
04_01_0314 - 4243928-4244361,4245178-4245415 27 9.5
>04_04_1026 + 30214437-30214937
Length = 166
Score = 230 bits (562), Expect = 8e-61
Identities = 109/162 (67%), Positives = 135/162 (83%), Gaps = 1/162 (0%)
Frame = +2
Query: 122 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATS-DWKGLKIT 298
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIA T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 299 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAXIMRNR 478
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+ V+ IA IMRNR
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARIMRNR 120
Query: 479 SMARYLSGSXKEILGTAQSVGCTVEGRPPHDLIDDINSGSFD 604
SMA+ ++G+ KEILGT SVGCTV+G+ P DL +I+ G +
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVE 162
>02_05_0416 + 28791512-28792012
Length = 166
Score = 226 bits (553), Expect = 1e-59
Identities = 107/162 (66%), Positives = 134/162 (82%), Gaps = 1/162 (0%)
Frame = +2
Query: 122 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATS-DWKGLKIT 298
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIA T+ DWKGL++T
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60
Query: 299 VQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAXIMRNR 478
V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+ V+ IA +MR R
Sbjct: 61 VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIARVMRPR 120
Query: 479 SMARYLSGSXKEILGTAQSVGCTVEGRPPHDLIDDINSGSFD 604
SMA+ ++G+ KEILGT SVGCTV+G+ P DL +I+ G +
Sbjct: 121 SMAKEMAGTVKEILGTCVSVGCTVDGKDPKDLQQEISDGEVE 162
>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
Length = 522
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 278 WKGLKITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQ 406
W + V V + + V+P+A A +IRA+ + P R++Q
Sbjct: 33 WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75
>11_04_0079 -
13284869-13284929,13285518-13285639,13285749-13285820,
13286048-13286200,13289510-13289709,13289745-13289947,
13289991-13290181
Length = 333
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 594 PLLMSSIRSCGGLPSTVHPTDCAVPRISF 508
PL S+RSCG L + P + ++PR+ +
Sbjct: 122 PLSPKSVRSCGPLKLVIEPYNGSLPRLHY 150
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 119 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 247
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 9.5
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 285 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 148
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1574 - 34536744-34537136,34541247-34541405,34541497-34542411,
34543642-34543731,34544324-34544390,34544483-34544676,
34544770-34545510,34545596-34545661,34545783-34545908,
34545978-34546073,34546153-34546521,34546602-34546724,
34546802-34546906,34547394-34547531,34547665-34547760,
34548018-34548275
Length = 1311
Score = 27.5 bits (58), Expect = 9.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -1
Query: 272 LWXWQCHHPPF*ETDQEDRF*GPKMMWHRLPRRHIA 165
+W C H P+ E D E R GP L R I+
Sbjct: 1182 MWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRIS 1217
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 161 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 262
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +2
Query: 332 IAVVPSAAALIIR--ALKEPPRDRKKQKNIKHNGNISLEXVVGIAXIMRNRS 481
+ +V S IIR + E +K ++HN S VVG+ ++NRS
Sbjct: 85 VLLVSSILLAIIRLICISEINNPQKSVSKLRHNTTTSRTIVVGLTTSLKNRS 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,094,141
Number of Sequences: 37544
Number of extensions: 374846
Number of successful extensions: 970
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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