Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B13
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   250   6e-67
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    65   3e-11
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    29   3.7  
Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical pr...    28   4.9  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  250 bits (612), Expect = 6e-67
 Identities = 112/161 (69%), Positives = 140/161 (86%)
 Frame = +2

Query: 122 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAXATSDWKGLKITV 301
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIA AT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 302 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEXVVGIAXIMRNRS 481
           +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ ++ IA IMR RS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 482 MARYLSGSXKEILGTAQSVGCTVEGRPPHDLIDDINSGSFD 604
           MA+ L G+ KEILGTAQSVGCT++G+ PHD+I+ I +G  +
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 161


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 28/46 (60%), Positives = 37/46 (80%)
 Frame = +2

Query: 467 MRNRSMARYLSGSXKEILGTAQSVGCTVEGRPPHDLIDDINSGSFD 604
           MR RSMA+ L G+ KEILGTAQSVGCT++G+ PHD+I+ I +G  +
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 46


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 543 HPTDCAVPRISFXEPERYRAIDL 475
           HPT CAV    F +P +Y  IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313


>Z81042-5|CAD44090.1|  331|Caenorhabditis elegans Hypothetical
           protein C27H6.4b protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 402 SRKISNTTATSPLXM*SALRXS*ETDQWPGTFLAX*KRFLAQHSQLDVLWRAGR 563
           SR +S TTA S       L     TD+    + A  KR+ A    +DVLWR  +
Sbjct: 94  SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 147


>Z81042-4|CAB02796.1|  272|Caenorhabditis elegans Hypothetical
           protein C27H6.4a protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +3

Query: 402 SRKISNTTATSPLXM*SALRXS*ETDQWPGTFLAX*KRFLAQHSQLDVLWRAGR 563
           SR +S TTA S       L     TD+    + A  KR+ A    +DVLWR  +
Sbjct: 35  SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,734,742
Number of Sequences: 27780
Number of extensions: 299241
Number of successful extensions: 683
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)