Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B06
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    29   0.77 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    28   1.4  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    26   4.1  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   4.1  

>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 551 MLVLFETPAGYAIFKLLDESXLSEIDNLYQEFNT 652
           M +L ET AGYAIFK  D+  L + D L ++  +
Sbjct: 1   MFILTETAAGYAIFKAKDK-LLKKRDALIEDLKS 33


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 217  SFXEIFSVVFLEEPEKLRPAALFHFP 140
            SF  IFS +F EEPE  +    F  P
Sbjct: 1836 SFDNIFSYIFSEEPESKKSPIWFELP 1861


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 598  QLKYGIARRCLE*NQHTGSTLIQXFNKYNQYH 503
            Q+ YG+++      +  G+T +Q FN+Y   H
Sbjct: 921  QIAYGVSKFFTSLTRALGNTSVQDFNEYKMIH 952


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 124 ESAQMWENETKLLDVTSRVPPKRPLKK 204
           ES +  ENE   +DVT  VPP + L +
Sbjct: 25  ESEKEGENEVLEIDVTKPVPPSKKLMR 51


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = -2

Query: 602 PAT*IWHSPPVSRIEPTYWKHTYTXIQQIQSVSFN-ILSFIRKIFSLTNTSHNSTASL*V 426
           P+  I  S P S   P+ +  +    Q   +  FN ++  +R+  S  N SH+S  +   
Sbjct: 206 PSRSISISNPQSLSFPSSFDQSNYNFQAASTPQFNPLIEHLRRSNSPLNPSHDSAGASTF 265

Query: 425 NTFFFKRFYDXV 390
           NT+F    Y  +
Sbjct: 266 NTYFPNSTYQNI 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,491
Number of Sequences: 5004
Number of extensions: 42258
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)