Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B06
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061...    52   4e-07
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987...    52   4e-07
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152...    28   7.5  
11_06_0284 + 21909758-21913645                                         27   9.9  
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633...    27   9.9  

>03_02_0999 -
           13105030-13105434,13105716-13105850,13105933-13106133,
           13106374-13106673,13106764-13106964,13107246-13107410,
           13107484-13107663,13108171-13108212,13108327-13108404
          Length = 568

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/34 (61%), Positives = 30/34 (88%)
 Frame = +2

Query: 551 MLVLFETPAGYAIFKLLDESXLSEIDNLYQEFNT 652
           MLVLFETPAG+A+FK+LDE  L ++++L++EF T
Sbjct: 1   MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTT 34


>03_02_0998 -
           13097675-13098079,13098307-13098441,13098522-13098722,
           13099060-13099359,13099449-13099649,13099932-13100096,
           13100170-13100349,13100896-13100937,13101040-13101117
          Length = 568

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 21/34 (61%), Positives = 30/34 (88%)
 Frame = +2

Query: 551 MLVLFETPAGYAIFKLLDESXLSEIDNLYQEFNT 652
           MLVLFETPAG+A+FK+LDE  L ++++L++EF T
Sbjct: 1   MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTT 34


>12_01_1116 +
           11914352-11914415,11915049-11915158,11915254-11915295,
           11916263-11916430,11916506-11916682,11916848-11917051,
           11917125-11917319
          Length = 319

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 5/36 (13%)
 Frame = +2

Query: 533 YKCASSMLVLFETPAGYAIF-----KLLDESXLSEI 625
           Y C   +LVLFETP+G+A+F     +L+  + L EI
Sbjct: 26  YHCLI-VLVLFETPSGFAMFGMSGDRLIQPNALQEI 60


>11_06_0284 + 21909758-21913645
          Length = 1295

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -2

Query: 485 IRKIFSLTNTSHNSTASL*VNTFFFKRFYDXVXKTFKSCLILLYIXNFMKNDNM 324
           + K+ S    SH S  ++    F +   Y+ + K +KSC  LLY+  F K + +
Sbjct: 790 LSKLHSTLQASHKSLDAIAKTMFMYS--YNDLPKEYKSC--LLYLAIFPKGEKI 839


>03_02_0884 +
           12160453-12160518,12160598-12160696,12163223-12163357,
           12163841-12163891,12164070-12164693,12164779-12164952,
           12165047-12165272,12165368-12165459,12165551-12165649,
           12165743-12165791,12165878-12165931,12166235-12166290,
           12166367-12166438,12166520-12166615,12167069-12167418,
           12167508-12167679,12167777-12167875,12167959-12168090,
           12168185-12168288,12168369-12168401,12168744-12168930,
           12169016-12169024
          Length = 992

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 125 SQILNS**TTVITHLNAEETLNRQNKTNH 39
           S ILNS  +  I H+N +E + + NKT H
Sbjct: 514 STILNS--SEEIKHINIDEIMTKMNKTGH 540


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,176,463
Number of Sequences: 37544
Number of extensions: 231330
Number of successful extensions: 370
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)