Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B04
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...   164   8e-42
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...   164   1e-41
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   9.4  

>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  164 bits (399), Expect = 8e-42
 Identities = 83/121 (68%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
 Frame = +3

Query: 243 VLTNSRVRLLMSKGHSCYXPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLTD 422
           VL   RVRLL+  GH CY PRRDGERKRKSVRGCIV  +L+VLAL IV++G  +IPGLTD
Sbjct: 67  VLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTD 126

Query: 423 GNVPRRLGPKRASKIRKLFNLSKEXDVRRYVVKR-VLPAXEGKXNAKPRHKAPNIQRLVT 599
             VP+RLGPKRASKIR+ FNLSKE DVR++V++R V+P  EGK   KP  KAP IQRLVT
Sbjct: 127 VTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVT 183

Query: 600 P 602
           P
Sbjct: 184 P 184



 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 42/66 (63%), Positives = 51/66 (77%)
 Frame = +2

Query: 44  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 223
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 224 FPMKQG 241
           FPM QG
Sbjct: 61  FPMFQG 66


>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score =  164 bits (398), Expect = 1e-41
 Identities = 82/121 (67%), Positives = 96/121 (79%), Gaps = 1/121 (0%)
 Frame = +3

Query: 243 VLTNSRVRLLMSKGHSCYXPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLTD 422
           VL   RVRLL+  GH CY PRRDGERKRKSVRGCIV  +L+VLAL I+++G  +IPGLTD
Sbjct: 67  VLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTD 126

Query: 423 GNVPRRLGPKRASKIRKLFNLSKEXDVRRYVVKR-VLPAXEGKXNAKPRHKAPNIQRLVT 599
             VP+RLGPKRASKIR+ FNLSKE DVR++V++R V+P  EGK   KP  KAP IQRLVT
Sbjct: 127 VTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRLVT 183

Query: 600 P 602
           P
Sbjct: 184 P 184



 Score = 98.3 bits (234), Expect = 8e-22
 Identities = 42/66 (63%), Positives = 51/66 (77%)
 Frame = +2

Query: 44  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 223
           MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV  D +G E+ GYV ++ GGNDKQG
Sbjct: 1   MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60

Query: 224 FPMKQG 241
           FPM QG
Sbjct: 61  FPMFQG 66


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 64  PGNGMPEVVRSGGRAQASYLLR 129
           PG+G+P +V    R  AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,679
Number of Sequences: 5004
Number of extensions: 45569
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)