Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B04
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   137   6e-33
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   137   8e-33
03_06_0662 + 35377974-35378270,35378354-35378623,35378795-353789...    27   9.7  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   9.7  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  137 bits (332), Expect = 6e-33
 Identities = 75/125 (60%), Positives = 89/125 (71%), Gaps = 4/125 (3%)
 Frame = +3

Query: 243 VLTNSRVRLLMSKGHSCYXP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 416
           VLT  RVRLL+ +G  C+    RRDGER+RKSVRGCIV  +LSV+ LVIV+KG  ++PGL
Sbjct: 67  VLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGL 126

Query: 417 TDGNVPRRLGPKRASKIRKLFNLSKEXDVRRYV--VKRVLPAXEGKXNAKPRHKAPNIQR 590
           TD   PR  GPKRASKIRKLFNLSK+ DVR+YV   +R      GK  +    KAP IQR
Sbjct: 127 TDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQR 182

Query: 591 LVTPV 605
           LVTP+
Sbjct: 183 LVTPL 187



 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 39/66 (59%), Positives = 50/66 (75%)
 Frame = +2

Query: 44  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 223
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 224 FPMKQG 241
           FPMKQG
Sbjct: 61  FPMKQG 66


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  137 bits (331), Expect = 8e-33
 Identities = 74/125 (59%), Positives = 90/125 (72%), Gaps = 4/125 (3%)
 Frame = +3

Query: 243 VLTNSRVRLLMSKGHSCYXP--RRDGERKRKSVRGCIVDANLSVLALVIVRKGAXEIPGL 416
           VLT+ RVRLL+ +G  C+    RRDGER+RKSVRGCIV  +LSV+ LVIV+KG  ++PGL
Sbjct: 67  VLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGL 126

Query: 417 TDGNVPRRLGPKRASKIRKLFNLSKEXDVRRYV--VKRVLPAXEGKXNAKPRHKAPNIQR 590
           TD   PR  GPKRASKIRKLFNL+K+ DVR+YV   +R      GK  +    KAP IQR
Sbjct: 127 TDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQR 182

Query: 591 LVTPV 605
           LVTP+
Sbjct: 183 LVTPL 187



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 40/66 (60%), Positives = 50/66 (75%)
 Frame = +2

Query: 44  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 223
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 224 FPMKQG 241
           FPMKQG
Sbjct: 61  FPMKQG 66


>03_06_0662 +
           35377974-35378270,35378354-35378623,35378795-35378973,
           35380073-35380116,35380295-35380384,35380472-35380588,
           35380679-35380803,35380883-35381155,35381253-35381386,
           35381518-35381604,35381714-35381831
          Length = 577

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 99  TTSNNFWHPVAGYETFNFMSC-GSIP 25
           T +N +++ V GY+ FN  SC G+IP
Sbjct: 34  TFTNLYFNSVPGYKWFNLQSCVGNIP 59


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 80  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 169
           +KL+ E+ DE KLRI YEK+       D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,537
Number of Sequences: 37544
Number of extensions: 351728
Number of successful extensions: 959
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)