Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_B04
(647 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical ... 150 1e-36
AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical... 29 3.8
U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in bl... 28 5.0
U64859-8|AAC69096.1| 378|Caenorhabditis elegans Prion-like-(q/n... 28 5.0
Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical pr... 28 6.6
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 28 6.6
AF039046-14|AAB94214.1| 388|Caenorhabditis elegans Prion-like-(... 28 6.6
AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in... 27 8.7
AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in ... 27 8.7
AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in ... 27 8.7
AF016451-3|AAB66001.1| 388|Caenorhabditis elegans Prion-like-(q... 27 8.7
>AL132902-1|CAB81996.1| 246|Caenorhabditis elegans Hypothetical
protein Y71A12B.1 protein.
Length = 246
Score = 150 bits (363), Expect = 1e-36
Identities = 75/120 (62%), Positives = 90/120 (75%)
Frame = +3
Query: 243 VLTNSRVRLLMSKGHSCYXPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAXEIPGLTD 422
+LTN RVRLL+ KG SCY R++GERKRKSVRGCIVDAN+S L+LVIV+KG EI GLTD
Sbjct: 67 ILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTD 126
Query: 423 GNVPRRLGPKRASKIRKLFNLSKEXDVRRYVVKRVLPAXEGKXNAKPRHKAPNIQRLVTP 602
+PR+LGPKRASKIRKLFNL+K DV +YV+ +G + AP IQRL+TP
Sbjct: 127 SVLPRKLGPKRASKIRKLFNLTKHDDVTKYVITHDKTFPDG----VTKTIAPKIQRLITP 182
Score = 110 bits (264), Expect = 9e-25
Identities = 48/66 (72%), Positives = 55/66 (83%)
Frame = +2
Query: 44 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 223
M+LN +YPATG QK FEV +E KLR+F+EKRM EV D LGDEWKGYV+R+ GGNDKQG
Sbjct: 1 MRLNFAYPATGLQKSFEVDEEKKLRLFFEKRMSQEVAIDALGDEWKGYVVRIGGGNDKQG 60
Query: 224 FPMKQG 241
FPMKQG
Sbjct: 61 FPMKQG 66
>AF099919-13|AAC68798.1| 636|Caenorhabditis elegans Hypothetical
protein F40G9.1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 62 YPATGCQKLFEVVDEHK---LRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 220
Y G ++FE+ E K RIF EK + + ++ ++ L++ G NDK+
Sbjct: 6 YLHVGLNRIFEIAKEKKNGKFRIFLEKNVKNVIFLQEIFEKSLFLCLKINGSNDKK 61
>U64859-9|AAC69090.1| 378|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 9 protein.
Length = 378
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/46 (23%), Positives = 19/46 (41%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + + P ++ C
Sbjct: 43 QQTQSCSCQSAPVQQQAPSCSCAQPQQTQTVQVQSTQCAPACQQSC 88
>U64859-8|AAC69096.1| 378|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 57
protein.
Length = 378
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/46 (23%), Positives = 19/46 (41%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + + P ++ C
Sbjct: 43 QQTQSCSCQSAPVQQQAPSCSCAQPQQTQTVQVQSTQCAPACQQSC 88
>Z81119-1|CAB03331.1| 363|Caenorhabditis elegans Hypothetical
protein T10H4.2 protein.
Length = 363
Score = 27.9 bits (59), Expect = 6.6
Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Frame = +1
Query: 256 AVFVF*CQRATHVTXRA-----AMERENVNQFVDVLLTPISRSWLLLLCARVPXKFLD*L 420
A+ F C+ HVT + +E +V++ + V+ I S+ ++ + + F
Sbjct: 58 AIMYFWCKPNAHVTQTSFTIFTILENSHVSKDIGVIAVTIWCSFYAMMLSLLSIHFF--- 114
Query: 421 MEMYPAV*VPNVLPKSVSCSTLAKXMMYVVMSSN 522
Y +V P +L K SC + K +Y++ S+
Sbjct: 115 -YRYTSVTAPILLMKRFSCRYIFKYTLYILTFSS 147
>Z71178-8|CAA94882.1| 552|Caenorhabditis elegans Hypothetical
protein B0024.10 protein.
Length = 552
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/54 (29%), Positives = 20/54 (37%)
Frame = +2
Query: 152 EADQLGDEWKGYVLRVAGGNDKQGFPMKQGRPDKQPCSSSDVKGPLMLXTAPRW 313
+AD + +W N KQ RP Q SSS GP P+W
Sbjct: 493 KADAMSADWLSLNKTFMPFNSTVNDDRKQKRPQFQSSSSSSHSGPPAKSAMPKW 546
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 77 CQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQ 220
C K F+ + ++ E+++ E E Q D W G LR G DK+
Sbjct: 272 CVKFFKNYMQEEVVQNIERKLQFEREEQQELDSWTGKSLRAEGVEDKE 319
>AF039046-14|AAB94214.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 54
protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/46 (23%), Positives = 19/46 (41%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + + P ++ C
Sbjct: 44 QQTQSCSCQSAPVQQQSPSCSCAQPQQTQNVQVQTTQCAPACQQSC 89
>AF016451-13|AAB66007.1| 445|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 8 protein.
Length = 445
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + P ++ C
Sbjct: 44 QQTQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSC 89
>AF016451-5|AAB65995.1| 438|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 7 protein.
Length = 438
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + P ++ C
Sbjct: 44 QQTQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSC 89
>AF016451-4|AAB65996.1| 388|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 6 protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + P ++ C
Sbjct: 44 QQTQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSC 89
>AF016451-3|AAB66001.1| 388|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 5
protein.
Length = 388
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/46 (23%), Positives = 18/46 (39%)
Frame = -1
Query: 272 QKTNTAVCQDXPVSSGILACRCRQRHEVHSPSIHRLTDQPLLRRPC 135
Q+T + CQ PV +C C Q + + P ++ C
Sbjct: 44 QQTQSCSCQSAPVQQQSPSCSCAQPQQTQQVQVQSTQCAPACQQSC 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,577,643
Number of Sequences: 27780
Number of extensions: 277644
Number of successful extensions: 691
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -