Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B03
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...   107   1e-24
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    33   0.048
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    29   0.59 
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    28   1.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.2  
SPAC869.06c |||cation binding protein |Schizosaccharomyces pombe...    26   5.5  
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    26   5.5  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   5.5  
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   9.6  
SPAC24C9.09 |||mitochondrial threonine-tRNA ligase|Schizosacchar...    25   9.6  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   9.6  

>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score =  107 bits (258), Expect = 1e-24
 Identities = 60/166 (36%), Positives = 94/166 (56%), Gaps = 3/166 (1%)
 Frame = +2

Query: 161 LFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML---YPEEDTPEEIIQRR 331
           +FPLLEFL+ ++T+D  ELLQAK ++L  TNM DYV ++   L   + +ED      ++R
Sbjct: 30  IFPLLEFLSLRQTHDPKELLQAKYDLLKDTNMTDYVANLWTNLHGGHTDEDMANAFAEKR 89

Query: 332 GVVLSELQELQDAVXPVLRLMQRDDVMKTIETMRDPKTLINHLSTNXEYEFKIEMIDSMY 511
             VL EL EL++ V  +L +++  D++  +   +D    + HL  +  Y    E I  +Y
Sbjct: 90  RSVLQELSELEEEVQGILGVLENPDLIAALR--QDKGQNLQHLQEH--YNITPERIAVLY 145

Query: 512 RLAKYRYECGNYVESASYLYFCQLVMSPTDKNYLSVLWGKLASEIL 649
           + A+++Y CGNY  ++  LY  +      + N  S  WGK ASEIL
Sbjct: 146 KFAQFQYNCGNYGGASDLLYHFRAFSKDPELN-ASATWGKFASEIL 190



 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +1

Query: 112 KFDLTFKIGQYLDRHLAVSFTRILS 186
           K+DL+ KI Q+LDRHL       LS
Sbjct: 14  KYDLSQKIMQHLDRHLIFPLLEFLS 38


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 32.7 bits (71), Expect = 0.048
 Identities = 19/45 (42%), Positives = 25/45 (55%)
 Frame = -2

Query: 613 QIILVSWRHHQLTKVKI*C*LHIISTFIAIFGQTIHAIDHFNFKL 479
           Q++ V W+HHQ       C   I + F  IFGQ I AID ++ KL
Sbjct: 332 QLLEVPWQHHQ-------CHPLIKTHFFGIFGQKIDAIDFYSAKL 369


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +2

Query: 416 TIETMRDPKTLINHLSTNXEYEFKIEMIDSMYRLAKYRYECGNY 547
           T+ T+ D   ++ HL+     +F +   ++M++ ++YRY   N+
Sbjct: 180 TVATLGDLIGMVGHLNDTSGVDFNLNEYNAMWKTSEYRYVDFNF 223


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
 Frame = -2

Query: 538 TFIAIFGQTIHAIDHFNFKLILXVCRKMVYKSFRIPH-----GFNCFHYIISLHESQYW 377
           TF+  +G  I+  D +N    L     +VY   ++ +      F+  + ++S+++SQ W
Sbjct: 83  TFLVKYGDLINIQDPYNLNKTLFSVSDLVYNGIQLDYDSYSISFDAKYVLVSVNKSQRW 141


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 401  DDVMKTIETMRDPKTLINHLSTNXE---YEFKIEMIDSMYRLAK 523
            +DV+K + T+  PK +I  L    +   +EF I+ ID ++  +K
Sbjct: 3764 NDVLKKLITILSPKVIITKLDFERDTFVHEFGIDSIDLIWLASK 3807


>SPAC869.06c |||cation binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -1

Query: 656 FVPKFR*PIYP-KEPTNNSCQLATSPVDKSKDMM 558
           FVP    P  P K P      L  +P+DK +DMM
Sbjct: 166 FVPTHSHPSAPNKPPFETVAGLFAAPIDKLRDMM 199


>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +2

Query: 140 SILIGISLFPLLEF---LAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTP 310
           S L+ ++ F L  F   +  ++ YD SE+L  ++E+ S      Y      +  P E T 
Sbjct: 143 SKLVIVANFDLKAFNYRIMYQKLYDSSEVLDDRIELFSALTCRKYNISDEDLANPSELTQ 202

Query: 311 EEII 322
           E ++
Sbjct: 203 EPVV 206


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 602 CQLATSPVDKSKDMMLTPHNFHIHSDIW 519
           C++    V KS D+ +  H F ++SD W
Sbjct: 506 CRMEHPNVVKSYDLCIDSHIFPLYSDTW 533


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +2

Query: 227 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVXPVLRLMQRDD 406
           K+ + S  N I Y +    +L      P+E ++ RG+ +   Q  +++   VL+      
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQRWKNSPESVLKARSEIT 247

Query: 407 VMK 415
           V K
Sbjct: 248 VCK 250


>SPAC24C9.09 |||mitochondrial threonine-tRNA
           ligase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -2

Query: 442 FRIPHGFNCFHYIISLHESQYWLYC---ILKFLQFRKNY--TSPLYNFFRSVFFRIEHSS 278
           F +PHG   ++ ++    +QY ++    I+  L F+K+    S  +  +    FR+E S 
Sbjct: 69  FFLPHGTRIYNRLVDFLRAQYQIHGFEEIITPLIFKKDLWEKSGHWQNYEKEIFRVEESR 128

Query: 277 DVSN 266
           +V +
Sbjct: 129 NVED 132


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 331  SPLYNFFRSVFFRIEHSSDVSNIIYH 254
            S L N+F+ +    EHS D ++ + H
Sbjct: 990  SKLVNYFKRIHGTNEHSKDTADFVLH 1015


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,249
Number of Sequences: 5004
Number of extensions: 51216
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)