Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_B01
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191     55   2e-08
03_05_0610 - 26108546-26108671,26108739-26108789,26109410-261095...    53   5e-08
02_05_1349 + 35841694-35843738,35844506-35844624,35844932-358450...    31   0.29 
06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866     28   1.5  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   4.7  
02_05_1007 + 33452774-33452993,33453028-33453122,33453208-334533...    27   4.7  
10_07_0122 - 13079268-13079801                                         26   8.3  

>03_02_0976 + 12841257-12841306,12841396-12841528,12842126-12842191
          Length = 82

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 23/31 (74%), Positives = 27/31 (87%)
 Frame = +1

Query: 52  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 144
           MQN+ G+ VDLY PRKCSA+NR+I AKDHAS
Sbjct: 1   MQNEEGQMVDLYVPRKCSATNRIITAKDHAS 31


>03_05_0610 -
           26108546-26108671,26108739-26108789,26109410-26109542,
           26109633-26109682
          Length = 119

 Score = 53.2 bits (122), Expect = 5e-08
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +1

Query: 52  MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 144
           MQN+ G+ VDLY PRKCS +NR+I AKDHAS
Sbjct: 1   MQNEEGQMVDLYVPRKCSTTNRIITAKDHAS 31


>02_05_1349 +
           35841694-35843738,35844506-35844624,35844932-35845075,
           35845189-35845310,35845474-35845609,35845861-35845957,
           35846727-35846899,35847099-35847262,35847466-35847537,
           35847833-35847928,35847999-35848124
          Length = 1097

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +2

Query: 44  HIKCRTTPVNSLTCTARGNARPATASST 127
           H++CR+TP +SLT     N  PA++SS+
Sbjct: 81  HLRCRSTPRDSLTYNTLLNHLPASSSSS 108


>06_01_1174 - 10025086-10027217,10027271-10027333,10027704-10027866
          Length = 785

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 31  PCGRTYKMQNDAGEFVDLY-CPRKCSASNRLIHAKDHASA 147
           P G+  + Q D G  ++L  CP +CS + +L+  KD A A
Sbjct: 255 PTGKDIQQQRDRGGPIELLVCPSRCSRTKQLV--KDVARA 292


>03_05_1096 -
           30364144-30365310,30365825-30365971,30366087-30366393,
           30366541-30366849,30367544-30370567,30370640-30372290,
           30372373-30373463,30373544-30373646,30373737-30374439,
           30374654-30375783,30375913-30376027,30376504-30376695,
           30377443-30377616,30378438-30378494,30378581-30378716,
           30378842-30378927,30379023-30379092,30379993-30380021,
           30380444-30380456,30380762-30381006
          Length = 3582

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 118 GGCWPSISSGSTSQRIHRRRSAFYMYVHTVHGN*RDAES 2
           G  W  + + S++QRI    + F + + T+H    D+E+
Sbjct: 787 GALWRILGANSSAQRIFGEATGFSLLLTTLHSFQNDSEN 825


>02_05_1007 +
           33452774-33452993,33453028-33453122,33453208-33453329,
           33453392-33453694,33454657-33454918,33455039-33455140,
           33455931-33457151,33457250-33457342
          Length = 805

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 16  VNSRVPCGRTYKMQNDAGEFVDLYCPRKCSASNRLIHAKD 135
           ++S V     YK  +D  +  DL+ P +C  + + IH KD
Sbjct: 72  ISSGVEDAAGYKQPSDP-QMKDLFLPFRCFCTRKDIHCKD 110


>10_07_0122 - 13079268-13079801
          Length = 177

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 188 HDLWRGXRQQSLAVAEAWSLAWMRRLLA 105
           H  WRG R +   V    SL WM+  +A
Sbjct: 4   HGQWRGRRLRRTQVMACMSLRWMQTKVA 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,289,650
Number of Sequences: 37544
Number of extensions: 174324
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)