Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_B01
(330 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 58 1e-09
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 35 0.016
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 35 0.016
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 35 0.016
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 35 0.016
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 35 0.016
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 35 0.016
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 29 0.79
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 29 0.79
Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 4.2
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 5.5
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 5.5
AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical ... 26 5.5
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 25 9.7
U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical p... 25 9.7
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +2
Query: 146 LQLVIADVXPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 298
+Q+ DV P TGR S Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 32 VQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83
Score = 54.0 bits (124), Expect = 2e-08
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +1
Query: 52 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 144
MQNDAG+ V+LY PRKCS+SNR+I KDHAS
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 38 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMY 211
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 895
Query: 212 VVCGAIRRMGES-DDCIVRLTKKDGILA 292
V A +GE+ C++ +T IL+
Sbjct: 896 SV-RASNLLGEAIRQCVITVTPAGQILS 922
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 38 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMY 211
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 212 VVCGAIRRMGES-DDCIVRLTKKDGILA 292
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 38 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMY 211
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 212 VVCGAIRRMGES-DDCIVRLTKKDGILA 292
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 38 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMY 211
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 212 VVCGAIRRMGES-DDCIVRLTKKDGILA 292
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 38 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMY 211
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 212 VVCGAIRRMGES-DDCIVRLTKKDGILA 292
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 34.7 bits (76), Expect = 0.016
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +2
Query: 38 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVXPATGRAADTSKMY 211
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 212 VVCGAIRRMGES-DDCIVRLTKKDGILA 292
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 50 KCRTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIA--DVXPATGRAADTSKM 208
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 29.1 bits (62), Expect = 0.79
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 50 KCRTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIA--DVXPATGRAADTSKM 208
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical
protein T25E12.4b protein.
Length = 220
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 167 VXPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 283
V + G + +S + A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 4.2
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 137 WSLAWMRRLLAEHFLGQYKS 78
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 250 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 155
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 250 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 155
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>AC006777-5|AAK72311.1| 247|Caenorhabditis elegans Hypothetical
protein Y46H3D.8 protein.
Length = 247
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 16 VNSRVPCGRTYKMQNDAG--EFVDLYCPRKCSASNRLIHAKDHASATASDC 162
V+S V C + G +FV+ YC + CS R + AS+++S C
Sbjct: 159 VDSVVACANDISICTTVGLQDFVNTYCQKTCS---RCASSTTTASSSSSSC 206
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 41 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 145
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 41 VHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQ 145
+H+ ++ N + C A+ P AS L MLQ
Sbjct: 695 LHVNSKSCNQNDVHCPAKSTLPPTAASFDLHKMLQ 729
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +2
Query: 59 TTPVNSLTCTARGNARPATASSTLRTMLQLQLVIADVXPATGRAADTS 202
TTP + T T T++ST +++ V + P T + T+
Sbjct: 263 TTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTT 310
>U97002-11|AAY86259.1| 121|Caenorhabditis elegans Hypothetical
protein K09H11.11 protein.
Length = 121
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +3
Query: 105 GQQPPHPR*GPCF 143
GQQPPHP+ P F
Sbjct: 19 GQQPPHPQIDPLF 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,681,502
Number of Sequences: 27780
Number of extensions: 139544
Number of successful extensions: 405
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -