Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A19
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    28   1.4  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   2.4  
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa...    26   4.1  
SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.2  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    25   7.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   7.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   7.2  

>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 276 VSSRNRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPGPGAD 130
           + SR+  +    S LST   W   P   H+   + +S++ P  P P A+
Sbjct: 385 LKSRHTSSDSSNSLLSTFRSWLFDPKQKHTADTLSSSAIRPRTPSPSAE 433


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 147 PGPGADRNTDSIDERPAHQIIGHFAGRIGR 58
           PGP     T+ I   P H I  HF  RI R
Sbjct: 413 PGPNDPWTTNGISLMPKHSIPLHFVNRIQR 442


>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
           Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 245 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQW 150
           GSQ C  +W+   N  + THG    QV  +++
Sbjct: 335 GSQVCNMAWSKTSNEIVTTHGFAKNQVSLWKY 366


>SPAC1B3.20 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 78

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -1

Query: 249 RGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPGP---GADRNTDSID 109
           R KS   T L   L+   +H   P+   + FPV+P P   G + N D ++
Sbjct: 15  RSKSEKQTDLRNALRETESHGMPPLRGPAGFPVNPRPFSHGGNANLDRLN 64


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 245 GSQACLRSWAGR*NHSLPTHGHQSWQVQCFQWIQALAQTGT 123
           GSQ C   W+ + N  + THG    +V  + +  ++++ GT
Sbjct: 460 GSQVCNLLWSKQTNEFISTHGFMENEVALWNY-PSVSRVGT 499


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 99  PGAHQCYPCSCLRQGLDPLETLNLP 173
           P  +QCY C C R     LE  +LP
Sbjct: 414 PSKYQCYSCRCARN--SSLEFTSLP 436


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 284 VQGCPHGTGWQAGGSQACL 228
           VQGCP G+   AGG+  C+
Sbjct: 302 VQGCPEGSPIGAGGACFCV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,123
Number of Sequences: 5004
Number of extensions: 51358
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)