Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A19
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0133 - 1057679-1057880,1058112-1058377                           29   4.3  
08_02_0925 - 22668875-22668889,22668942-22669018,22669383-226695...    28   7.5  
01_06_0318 - 28434817-28435197,28435333-28435461                       28   7.5  
12_01_0862 + 8161117-8163913,8164000-8164019                           27   9.9  
10_08_0508 - 18416688-18416795,18417058-18417477                       27   9.9  
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450...    27   9.9  

>03_01_0133 - 1057679-1057880,1058112-1058377
          Length = 155

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -1

Query: 489 CTQ--RLSWPCRSKQPKMRGLEPNQR 418
           CT+  RL WPCR  QP  +GL P  R
Sbjct: 64  CTRGARLGWPCR--QPNTKGLHPWMR 87


>08_02_0925 -
           22668875-22668889,22668942-22669018,22669383-22669500,
           22669662-22669685,22670067-22670360,22670456-22670563,
           22671098-22671946
          Length = 494

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 61  SNPSSKMANYLMRRALINAIRVPVCARAWIH-WK 159
           S P   + N + R +L +A+R    +R+WIH W+
Sbjct: 32  SLPGELLENIVSRLSLRDAVRTSAISRSWIHRWE 65


>01_06_0318 - 28434817-28435197,28435333-28435461
          Length = 169

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -3

Query: 409 HXPVGAWNSAKV*QNEALYRVFFXSRVNLRQSPFXFSRRALMCR 278
           H  V  W ++    + + YRV F  R  L+  P   S     CR
Sbjct: 38  HRTVAEWETSGEYSSRSAYRVLFFGRTRLQHKPIWQSLAPPRCR 81


>12_01_0862 + 8161117-8163913,8164000-8164019
          Length = 938

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 264 NRMAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVD 148
           NR+  +G S ++  LG   K  P H ++  L  S+FP D
Sbjct: 407 NRLDNQGLSMVTRLLGLSYKHLPVHLKNCFLLCSIFPED 445


>10_08_0508 - 18416688-18416795,18417058-18417477
          Length = 175

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 202 WFQRPAQLRRQA*LPPACHPVP*GHP 279
           W +  A+ R +  LP  CHPVP G P
Sbjct: 92  WIETAARQRGKLRLPKQCHPVP-GSP 116


>06_03_0849 -
           25344261-25344416,25344652-25344808,25344917-25345056,
           25345160-25345295,25345392-25345663,25345809-25346068,
           25346716-25347035,25347287-25347352,25347439-25347510,
           25347609-25347680,25347776-25347858,25348068-25348139,
           25348389-25348485,25348918-25349050,25349158-25349236
          Length = 704

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 263 TGWQAGGSQACLRSWAG 213
           TGW AGG   C  +W G
Sbjct: 44  TGWSAGGGDPCGAAWMG 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,314,221
Number of Sequences: 37544
Number of extensions: 390795
Number of successful extensions: 954
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)