Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A19
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...    68   7e-12
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   8.8  
AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical...    27   8.8  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   8.8  
AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical...    27   8.8  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score = 67.7 bits (158), Expect = 7e-12
 Identities = 34/90 (37%), Positives = 48/90 (53%)
 Frame = +3

Query: 285 IXALREKXKGDWRKLTLEXKKTLYRASFCQTFAEFQAPTGXWKGVVGWALVLSSLAAWIY 464
           I  +R K + DW+ L+ E KK LYR SF QT +EF+APTG WK +    L +  L  +  
Sbjct: 66  IAPIRAKEQADWKNLSAEEKKLLYRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYA 125

Query: 465 MAMKVFVYSPIPDSLXEHRHXAXLXRMLDL 554
           + + V VY  +P +       A + R L L
Sbjct: 126 VLLNVCVYPELPPTFQNEYKEAQVERALVL 155



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/34 (55%), Positives = 22/34 (64%)
 Frame = +2

Query: 173 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFRED 274
           K   RE VGYG NG   Y DR D+  PAIRFR++
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKE 62


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 140 GPGSTGNTELAKIGDREWVGYGFNGQ 217
           G G TG  EL    D E V +GFNG+
Sbjct: 607 GQGGTGGHELTHGYDDEGVQFGFNGE 632


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 131  SAPGPGSTGNTELAKIGDREWVGYGFNGQPNYVDRPDFPL 250
            S P P S+ N E+    +    GYG   QP YVD  D  L
Sbjct: 1467 STPNPESSINCEVRV--ETSQAGYGGAQQPGYVDEDDTDL 1504


>AL132952-19|CAB63382.2| 1677|Caenorhabditis elegans Hypothetical
           protein Y51H4A.12 protein.
          Length = 1677

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 604 CFGSPTWRQVPSMGFTLRSN 545
           C G  TW+ +  MG TL+SN
Sbjct: 843 CEGCKTWQHMACMGLTLKSN 862


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 131  SAPGPGSTGNTELAKIGDREWVGYGFNGQPNYVDRPDFPL 250
            S P P S+ N E+    +    GYG   QP YVD  D  L
Sbjct: 1467 STPNPESSINCEVRV--ETSQAGYGGAQQPGYVDEDDTDL 1504


>AF038614-10|AAB92063.1| 1655|Caenorhabditis elegans Hypothetical
           protein F15E6.1 protein.
          Length = 1655

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 604 CFGSPTWRQVPSMGFTLRSN 545
           C G  TW+ +  MG TL+SN
Sbjct: 835 CEGCKTWQHMACMGLTLKSN 854


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,817,514
Number of Sequences: 27780
Number of extensions: 302336
Number of successful extensions: 672
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)