Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A11
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...   198   7e-52
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    95   7e-21
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    27   1.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.1  
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    25   6.5  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    25   6.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.6  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score =  198 bits (482), Expect = 7e-52
 Identities = 88/162 (54%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
 Frame = +3

Query: 123 IKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSADPF 302
           ++FL+++KPF   LP I  P RK+ F+ K+LWT +TL IFL   Q+PL+GI+SSDS+DP 
Sbjct: 4   LRFLDLVKPFAPFLPEIAAPERKVPFKQKMLWTGVTLLIFLVMSQVPLYGIVSSDSSDPL 63

Query: 303 YWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRXLFNGAXKLFGM 479
            W+R+ILA+N GTLMELGISPIVTS +++QLL G+++IEV  +   DR ++    K   +
Sbjct: 64  LWLRMILAANRGTLMELGISPIVTSSMLVQLLVGSQLIEVNMELKSDREMYQLVQKFLAI 123

Query: 480 VITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           +I  GQA  YV+TGMYG P ++GAG+CLL+I+QL  A LIVL
Sbjct: 124 IIAFGQATAYVLTGMYGRPQDLGAGICLLLILQLAAASLIVL 165


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 95.1 bits (226), Expect = 7e-21
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 1/163 (0%)
 Frame = +3

Query: 120 GIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSADP 299
           G +F+  IKP  S+LP +  P   ++   K+ W A  + ++     IP++G   +D+ DP
Sbjct: 3   GARFINFIKPLSSLLPEVEGPKTHLELVEKLGWMAGCVVVYQILSIIPVYGAEKTDTLDP 62

Query: 300 FYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRXLFNGAXKLFG 476
               RV+  S+   LM  G++PI  S  ++Q+LA  K I V  +   DR LF  A K+  
Sbjct: 63  INNFRVLDGSSASGLMITGLAPIYLSSFLLQILASKKKIAVNFNLIIDRVLFQNAQKVVS 122

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
            ++ +  A+ YV +G YG  S++G    +++I+Q+ + G++ +
Sbjct: 123 ALLYLILAVTYVSSGYYGSFSDLGIFRFIMLILQIFLPGIVCI 165


>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 596 KTGHXQLYDNEEAHSGTNFTGFAIHSSHYINN-SLTNSNHHT 474
           +T    +Y + E H+G    G  +HSS   NN S T+SN  T
Sbjct: 144 QTHGDDVYLSTEEHNGNAARGLPVHSSFKQNNSSQTSSNKGT 185


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +3

Query: 123  IKFLEVI-KPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMS 281
            I+FL+   KP+ S    +    R++ +  K  WT   + I L     PLFGI S
Sbjct: 1055 IRFLDPPPKPYLSYKMYLNDFTRQLHYIPKGSWTVQIVAIVLLILLPPLFGIFS 1108


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 6/15 (40%), Positives = 12/15 (80%)
 Frame = +2

Query: 344 DGAWYLTYCNIRTHH 388
           +G+W+   C+I++HH
Sbjct: 155 EGSWFCVTCSIKSHH 169


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 172 IXGNILQNGLITSKNFIPILIYC 104
           + G  L +GL+  K+F+P L  C
Sbjct: 83  VQGEDLDDGLLVDKHFLPTLFKC 105


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -3

Query: 472 NNXCAPLNKXLSFGVSPTSMILAPASNCMMSPDVTIGEIPSSINVPXFDARITRIQ 305
           N  C   +K     + P ++I +P+S    S ++   + PSS+NV   + R+  +Q
Sbjct: 368 NGLCRNDSKCRFLMILPETIIKSPSSFIGDSYNIANIDPPSSMNVQSSEFRVGEVQ 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,316,710
Number of Sequences: 5004
Number of extensions: 43009
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)