Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_A11
(606 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0577 - 10862976-10863215,10863653-10863788,10863906-108640... 204 6e-53
09_02_0576 - 10853361-10853600,10854033-10854168,10854285-108544... 204 6e-53
03_02_0140 + 5864612-5864955,5865154-5865381,5865460-5865814,586... 204 6e-53
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 159 1e-39
12_02_1195 + 26906814-26907121,26907771-26907992,26908913-269091... 76 3e-14
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242... 70 1e-12
12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388 68 7e-12
12_02_1184 + 26785739-26786113 60 1e-09
12_02_1183 - 26764883-26765174,26765559-26765677 60 2e-09
02_01_0240 - 1593186-1593323,1593380-1593406 30 1.2
>09_02_0577 -
10862976-10863215,10863653-10863788,10863906-10864030,
10864132-10864516,10864571-10864798,10864976-10865319
Length = 485
Score = 204 bits (497), Expect = 6e-53
Identities = 93/163 (57%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Frame = +3
Query: 120 GIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSADP 299
G + L +++PF + LP + RKI FR KV++T I+LFIFL C Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 300 FYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRXLFNGAXKLFG 476
FYW+RVILASN GT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DR L NGA KL G
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLG 123
Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
++I +G+A+ YV++GMYG S++G G +LII+QL AG+IV+
Sbjct: 124 ILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVI 166
>09_02_0576 -
10853361-10853600,10854033-10854168,10854285-10854409,
10854487-10854871,10854934-10855161,10855332-10855675
Length = 485
Score = 204 bits (497), Expect = 6e-53
Identities = 93/163 (57%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Frame = +3
Query: 120 GIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSADP 299
G + L +++PF + LP + RKI FR KV++T I+LFIFL C Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 300 FYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRXLFNGAXKLFG 476
FYW+RVILASN GT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DR L NGA KL G
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLG 123
Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
++I +G+A+ YV++GMYG S++G G +LII+QL AG+IV+
Sbjct: 124 ILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVI 166
>03_02_0140 +
5864612-5864955,5865154-5865381,5865460-5865814,
5865899-5866023,5866150-5866285,5866382-5866621
Length = 475
Score = 204 bits (497), Expect = 6e-53
Identities = 93/163 (57%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
Frame = +3
Query: 120 GIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSADP 299
G + L +++PF + LP + RKI FR KV++T I+LFIFL C Q+PL+GI S+ ADP
Sbjct: 4 GFRVLHLVRPFLAFLPEVQSADRKIPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADP 63
Query: 300 FYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPK-DRXLFNGAXKLFG 476
FYW+RVILASN GT+MELGI+PIVTSG++MQLL G+KIIEV ++ + DR L NGA KL G
Sbjct: 64 FYWMRVILASNRGTVMELGITPIVTSGMVMQLLVGSKIIEVDNSVREDRALLNGAQKLLG 123
Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
++I +G+A+ YV++GMYG S++G G +LII+QL AG+IV+
Sbjct: 124 ILIAIGEAVAYVLSGMYGSVSQLGTGNAILIILQLFFAGIIVI 166
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 159 bits (387), Expect = 1e-39
Identities = 72/166 (43%), Positives = 111/166 (66%), Gaps = 6/166 (3%)
Frame = +3
Query: 126 KFLEVIKPFCSILPXIXKPX-RKIQFRXKVLWTAITLFIFLXCCQIPLFGI----MSSDS 290
+ L++++PF +LP + +P R++ FR K+ TA LF FL C Q+PL+G+ +
Sbjct: 10 RLLDLVRPFMPLLPEVREPDGRRVPFRRKLACTAAALFAFLACSQLPLYGLHRAAAAGGG 69
Query: 291 ADPFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEV-GDTPKDRXLFNGAXK 467
ADPFYW+R ILASN GT+MELGI+P+VT+G ++QLL G+ ++ P DR L + A K
Sbjct: 70 ADPFYWVRAILASNRGTVMELGITPVVTAGTLVQLLVGSNLVRADSSNPDDRALLSAAQK 129
Query: 468 LFGMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
L +VIT G+A YV++G YG +GAG +L+++QL + G++ +
Sbjct: 130 LLSIVITAGEATAYVLSGAYGSVGVLGAGNAVLVVLQLVLGGMVAI 175
>12_02_1195 +
26906814-26907121,26907771-26907992,26908913-26909153,
26909512-26909642,26910336-26910474,26910600-26910810,
26911371-26911759
Length = 546
Score = 75.8 bits (178), Expect = 3e-14
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 4/142 (2%)
Frame = +3
Query: 192 IQFRXKVLWTAITLFIFLXCCQIPLFGIMS----SDSADPFYWIRVILASNXGTLMELGI 359
+ FR K +TA +L +FL Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 15 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 74
Query: 360 SPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLFGMVITVGQAIVYVMTGMYGEPS 539
P++ S + +++ + +I P N A KL + + + A+ V++ G +
Sbjct: 75 IPLLLSEMAVRIFSA--LIITRWPPFHHVRLNRARKLLAIAMAMVMAVSGVLSA--GVAA 130
Query: 540 EIGAGVCLLIIIQLXVAGLIVL 605
E+G L+++ QL + G+I +
Sbjct: 131 ELGTMASLVVMFQLFLGGMIAI 152
>09_04_0704 +
19623046-19623386,19623583-19623792,19623872-19624223,
19624320-19624444,19624578-19624668,19624817-19625050
Length = 450
Score = 70.1 bits (164), Expect = 1e-12
Identities = 43/154 (27%), Positives = 82/154 (53%), Gaps = 4/154 (2%)
Frame = +3
Query: 156 SILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSD---SADPFYWIRVILA 326
+++P + P + I R K +TAI LFIF+ Q+ L+GI DP +W+ +ILA
Sbjct: 12 ALVPEVQCPDQPISPRQKFKYTAIVLFIFVTASQVLLYGIQHQPRTIEPDPLHWLHLILA 71
Query: 327 SNXGTLMELGISPIVTSGLIMQLLAGAKIIEVG-DTPKDRXLFNGAXKLFGMVITVGQAI 503
S+ TL+ GI I+ +++++ KII + P+ L N A +L G+++ + A+
Sbjct: 72 SSRSTLLSHGIVAILVPEVLVKIWVYLKIITLDTSAPETGVLMNRAQRLLGILVAILGAV 131
Query: 504 VYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
+ + + + + LI++Q+ + +IV+
Sbjct: 132 NFYVRSQHFTVNTV------LIMLQILCSDIIVI 159
>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
Length = 483
Score = 67.7 bits (158), Expect = 7e-12
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 2/164 (1%)
Frame = +3
Query: 120 GIKFLEVIKPFCSILPXIXKPXRK-IQFRXKVLWTAI-TLFIFLXCCQIPLFGIMSSDSA 293
G +++P + P + + + FR +V TA +L + L +PL+
Sbjct: 13 GTALWRLLRPLAVLGPRMQRRREAAVPFRGQVRNTAAASLLLLLSLSHVPLYAGAGDADP 72
Query: 294 DPFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLF 473
DP +W R +LA+ GT+MELG++P+VTS ++++LLA ++ D+ +
Sbjct: 73 DPLFWARPLLAAPRGTVMELGVAPVVTSWVVVRLLAA--LLFDSDSSTTVASCELLARCL 130
Query: 474 GMVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
V + ++ + + G GAG L+++QL G++V+
Sbjct: 131 AYVTNASRLVIGIAAAL-GMCGSGGAGNAALVVLQLFAGGVVVV 173
>12_02_1184 + 26785739-26786113
Length = 124
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Frame = +3
Query: 192 IQFRXKVLWTAITLFIFLXCCQIPLFGIMS---SDSADPFYWIRVILASNXGTLMELGIS 362
+ FR KVL+TA++L +FL ++ L+G+ + DP YW+ + AS T+M LG+
Sbjct: 33 VSFRRKVLYTAVSLLVFLVAGELLLYGVQNYYGGGEHDPRYWMNAMSASLRPTVMALGLV 92
Query: 363 PIVTSGLIMQLLAGAKIIEVGD 428
P++ S +++ L KII V D
Sbjct: 93 PLLYSEMVVHLCMALKIIGVHD 114
>12_02_1183 - 26764883-26765174,26765559-26765677
Length = 136
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Frame = +3
Query: 192 IQFRXKVLWTAITLFIFLXCCQIPLFGIMS----SDSADPFYWIRVILASNXGTLMELGI 359
+ FR K +TA +L +FL Q+PL+G+ D DP YW+ + AS+ TLM LGI
Sbjct: 48 VSFRRKAAYTAASLLVFLVAGQLPLYGVKKYNGDKDVPDPLYWMNCMFASSNNTLMTLGI 107
Query: 360 SPIVTSGLIMQLLA 401
P++ S + +++ +
Sbjct: 108 IPLLLSEMAVRIFS 121
>02_01_0240 - 1593186-1593323,1593380-1593406
Length = 54
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 248 MLPDSLIWYNVIRQCRSLLLDPCNSCIKXRDI 343
++ D L+W + R C+S ++P C R I
Sbjct: 15 LISDGLLWLAIARCCKSTCMEPIQGCFLSRQI 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,272,655
Number of Sequences: 37544
Number of extensions: 255207
Number of successful extensions: 623
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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