Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A11
         (606 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC026179-1|AAH26179.1|  418|Homo sapiens SEC61A2 protein protein.     306   3e-83
AF346603-1|AAK29084.1|  476|Homo sapiens Sec61 alpha form 2 prot...   306   3e-83
AK022640-1|BAB14148.1|  437|Homo sapiens protein ( Homo sapiens ...   302   7e-82
AF346602-1|AAK29083.1|  476|Homo sapiens Sec61 alpha form 1 prot...   300   3e-81
AF084458-1|AAD39847.1|  476|Homo sapiens sec61 homolog protein.       300   3e-81
AK074928-1|BAC11298.1|  356|Homo sapiens protein ( Homo sapiens ...    79   2e-14
U57627-1|AAB03839.2|  901|Homo sapiens ocrl1 protein.                  30   5.5  
M88162-1|AAA59964.2|  968|Homo sapiens Lowe oculocerebrorenal sy...    30   5.5  
BC130612-1|AAI30613.1|  893|Homo sapiens oculocerebrorenal syndr...    30   5.5  
BC094726-1|AAH94726.1|  893|Homo sapiens oculocerebrorenal syndr...    30   5.5  
AL662877-2|CAI41087.1|  893|Homo sapiens oculocerebrorenal syndr...    30   5.5  
AL662877-1|CAI41088.1|  901|Homo sapiens oculocerebrorenal syndr...    30   5.5  
AL138745-5|CAI42615.1|  893|Homo sapiens oculocerebrorenal syndr...    30   5.5  
AL138745-4|CAI42616.1|  901|Homo sapiens oculocerebrorenal syndr...    30   5.5  
AL022162-2|CAI95696.1|  893|Homo sapiens oculocerebrorenal syndr...    30   5.5  
AL022162-1|CAI95695.1|  901|Homo sapiens oculocerebrorenal syndr...    30   5.5  

>BC026179-1|AAH26179.1|  418|Homo sapiens SEC61A2 protein protein.
          Length = 418

 Score =  306 bits (752), Expect = 3e-83
 Identities = 145/163 (88%), Positives = 154/163 (94%)
 Frame = +3

Query: 117 MGIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSAD 296
           MGIKFLEVIKPFC++LP I KP RKIQFR KVLWTAITLFIFL CCQIPLFGIMSSDSAD
Sbjct: 1   MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 297 PFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLFG 476
           PFYW+RVILASN GTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDR LFNGA KLFG
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           M+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQL VAGLIVL
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVL 163


>AF346603-1|AAK29084.1|  476|Homo sapiens Sec61 alpha form 2
           protein.
          Length = 476

 Score =  306 bits (752), Expect = 3e-83
 Identities = 145/163 (88%), Positives = 154/163 (94%)
 Frame = +3

Query: 117 MGIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSAD 296
           MGIKFLEVIKPFC++LP I KP RKIQFR KVLWTAITLFIFL CCQIPLFGIMSSDSAD
Sbjct: 1   MGIKFLEVIKPFCAVLPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 297 PFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLFG 476
           PFYW+RVILASN GTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDR LFNGA KLFG
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           M+IT+GQAIVYVMTGMYG+P+E+GAG+CLLIIIQL VAGLIVL
Sbjct: 121 MIITIGQAIVYVMTGMYGDPAEMGAGICLLIIIQLFVAGLIVL 163


>AK022640-1|BAB14148.1|  437|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12578 fis, clone NT2RM4001054, moderately
           similar to Homo sapiens sec61 homolog mRNA. ).
          Length = 437

 Score =  302 bits (741), Expect = 7e-82
 Identities = 143/163 (87%), Positives = 153/163 (93%)
 Frame = +3

Query: 117 MGIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSAD 296
           MGIKFLEVIKPFC++ P I KP RKIQFR KVLWTAITLFIFL CCQIPLFGIMSSDSAD
Sbjct: 1   MGIKFLEVIKPFCAVPPEIQKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 297 PFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLFG 476
           PFYW+RVILASN GTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDR LFNGA KLFG
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           M+IT+GQAIVYV+TGMYG+P+E+GAG+CLLIIIQL VAGLIVL
Sbjct: 121 MIITIGQAIVYVITGMYGDPAEMGAGICLLIIIQLFVAGLIVL 163


>AF346602-1|AAK29083.1|  476|Homo sapiens Sec61 alpha form 1
           protein.
          Length = 476

 Score =  300 bits (736), Expect = 3e-81
 Identities = 143/163 (87%), Positives = 151/163 (92%)
 Frame = +3

Query: 117 MGIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSAD 296
           M IKFLEVIKPFC ILP I KP RKIQF+ KVLWTAITLFIFL CCQIPLFGIMSSDSAD
Sbjct: 1   MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 297 PFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLFG 476
           PFYW+RVILASN GTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDR LFNGA KLFG
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQL VAGLIVL
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVL 163


>AF084458-1|AAD39847.1|  476|Homo sapiens sec61 homolog protein.
          Length = 476

 Score =  300 bits (736), Expect = 3e-81
 Identities = 143/163 (87%), Positives = 151/163 (92%)
 Frame = +3

Query: 117 MGIKFLEVIKPFCSILPXIXKPXRKIQFRXKVLWTAITLFIFLXCCQIPLFGIMSSDSAD 296
           M IKFLEVIKPFC ILP I KP RKIQF+ KVLWTAITLFIFL CCQIPLFGIMSSDSAD
Sbjct: 1   MAIKFLEVIKPFCVILPEIQKPERKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSAD 60

Query: 297 PFYWIRVILASNXGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRXLFNGAXKLFG 476
           PFYW+RVILASN GTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDR LFNGA KLFG
Sbjct: 61  PFYWMRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFG 120

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQL VAGLIVL
Sbjct: 121 MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVL 163


>AK074928-1|BAC11298.1|  356|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90447 fis, clone NT2RP3001240, highly similar to
           Canis familiaris sec61 homologue mRNA. ).
          Length = 356

 Score = 78.6 bits (185), Expect = 2e-14
 Identities = 35/43 (81%), Positives = 41/43 (95%)
 Frame = +3

Query: 477 MVITVGQAIVYVMTGMYGEPSEIGAGVCLLIIIQLXVAGLIVL 605
           M+IT+GQ+IVYVMTGMYG+PSE+GAG+CLLI IQL VAGLIVL
Sbjct: 1   MIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAGLIVL 43


>U57627-1|AAB03839.2|  901|Homo sapiens ocrl1 protein.
          Length = 901

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 765 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 818


>M88162-1|AAA59964.2|  968|Homo sapiens Lowe oculocerebrorenal
           syndrome protein protein.
          Length = 968

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 832 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 885


>BC130612-1|AAI30613.1|  893|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 757 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 810


>BC094726-1|AAH94726.1|  893|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 757 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 810


>AL662877-2|CAI41087.1|  893|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 757 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 810


>AL662877-1|CAI41088.1|  901|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 901

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 765 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 818


>AL138745-5|CAI42615.1|  893|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 757 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 810


>AL138745-4|CAI42616.1|  901|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 901

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 765 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 818


>AL022162-2|CAI95696.1|  893|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 893

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 757 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 810


>AL022162-1|CAI95695.1|  901|Homo sapiens oculocerebrorenal syndrome
           of Lowe protein.
          Length = 901

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +2

Query: 152 LQYIAXNXETXT*DSIPXESIMDSNHIIYFLXMLPDSLIWYNVIRQCRSLLLDP 313
           LQ I    +T   ++IP  +   +  ++ FL  LP+ +I Y + ++C     DP
Sbjct: 765 LQQIIDCLDTSIPETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLDSAYDP 818


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,118,550
Number of Sequences: 237096
Number of extensions: 1487853
Number of successful extensions: 2820
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2820
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)