Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A10
         (303 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   0.83 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   1.4  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   4.4  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    20   7.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 0.83
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 105 VAC*IPAEINNFSIKNCSALKPEKPHVSSN 16
           +AC   A+ N+    N   LK E  H SSN
Sbjct: 283 LACMFDAQTNSMICLNGQVLKRESIHNSSN 312


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 303 RXSWLACGLRPFTRSF 256
           R + L CGL+ +TRSF
Sbjct: 232 RRASLFCGLQKYTRSF 247


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 303 RXSWLACGLRPFTRSF 256
           R + L CGL+ +TRSF
Sbjct: 227 RRASLFCGLQKYTRSF 242


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 303 RXSWLACGLRPFTRSFCF 250
           R + + CG++ F   FCF
Sbjct: 715 RPTDIVCGIQRFAAGFCF 732


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = -1

Query: 66  IKNCSALKPEKPHVSSN 16
           + +CS +  E PH+ ++
Sbjct: 101 VSDCSTISEENPHLKAS 117


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 124 TXQRLPCCLLNSGRD 80
           T  R PC LLN   D
Sbjct: 22  TLGRFPCLLLNGKXD 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,645
Number of Sequences: 438
Number of extensions: 1356
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6368931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)