Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A07
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal prote...    97   4e-21
Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical pr...    31   0.29 
AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear recep...    31   0.29 
AF014939-9|AAB63931.2|  246|Caenorhabditis elegans Hypothetical ...    29   1.2  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical ...    27   4.7  
AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical ...    27   4.7  
Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical...    26   8.1  

>U80953-1|AAB52557.2|   56|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 29 protein.
          Length = 56

 Score = 96.7 bits (230), Expect = 4e-21
 Identities = 38/56 (67%), Positives = 46/56 (82%)
 Frame = +2

Query: 83  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKKLD 250
           MG  N+W+SHPR++G GSRSCR C+  HGLIRKYGL++CR+CF E A DI FKKLD
Sbjct: 1   MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56


>Z72504-3|CAA96605.1|  449|Caenorhabditis elegans Hypothetical
           protein C29E6.5 protein.
          Length = 449

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 244
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 47  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80


>AF273784-1|AAG15133.1|  459|Caenorhabditis elegans nuclear receptor
           NHR-43 protein.
          Length = 459

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 CRSCSNRHGLIRKYGLNICRQCFXEYAHDIXFKK 244
           CR C  R+   + +G++ICR C   +   +  KK
Sbjct: 57  CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90


>AF014939-9|AAB63931.2|  246|Caenorhabditis elegans Hypothetical
           protein ZC132.9 protein.
          Length = 246

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 12  QRSAILKVYLTLLLVSEKQFNFLKWATQIF 101
           +RS  + +Y+ LL V  K F F+ WA  +F
Sbjct: 95  RRSVAVLLYVILLSVIAKDFGFIMWAVILF 124


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 130 RISVMPILLQQAWLNPQVRFEHMQTVLXRVCS*H 231
           RI   P++L+Q WL    R E       R+CS H
Sbjct: 27  RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60


>AF100669-3|AAK39266.1|  747|Caenorhabditis elegans Hypothetical
           protein R11E3.4 protein.
          Length = 747

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 77  LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 184
           LK   A  W+ +P+R G  +R  C SC     ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518


>AC006608-4|AAF39758.2|  381|Caenorhabditis elegans Hypothetical
           protein C15F1.5a protein.
          Length = 381

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 185 RTCGLSHACWSRIGMTEILVRICEGEN 105
           R C ++H C+S +   E +   CEGEN
Sbjct: 40  RVCPVAH-CYSSLTAPEPMTSTCEGEN 65


>Z74040-6|CAA98509.2|  457|Caenorhabditis elegans Hypothetical
           protein K10D6.1 protein.
          Length = 457

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 142 MPILLQQAWLNPQVRFEHMQTVLXRVCS*HXIQE 243
           M I + + WL+P ++F+H+      +   H + E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134


>AF022985-15|AAB69969.2|  435|Caenorhabditis elegans Hypothetical
           protein T15B7.16 protein.
          Length = 435

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 142 MPILLQQAWLNPQVRFEHMQTVL 210
           + +L  Q W +P++RF+H+   L
Sbjct: 80  LDLLFSQIWHDPRLRFDHLTNCL 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,290,124
Number of Sequences: 27780
Number of extensions: 118841
Number of successful extensions: 290
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)