Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A06
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10...   108   5e-25
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a...   108   6e-25
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   5.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   7.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.3  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    25   7.3  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   9.6  

>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score =  108 bits (260), Expect = 5e-25
 Identities = 54/109 (49%), Positives = 64/109 (58%)
 Frame = +1

Query: 103 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 282
           +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D 
Sbjct: 16  ILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMSICILGDAHDLDR 75

Query: 283 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
           AK   V  M                           SE LIKQIPR +G
Sbjct: 76  AKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124



 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = +2

Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTQXIDEVKGTIKFQMKKVL 544
           + P LLGPGL+KAGKFP  +SH + +   I EVK TIKFQ+KKVL
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVL 162


>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
           L10a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 216

 Score =  108 bits (259), Expect = 6e-25
 Identities = 54/109 (49%), Positives = 64/109 (58%)
 Frame = +1

Query: 103 VLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDE 282
           +L+ S++KKRNF ETVELQIGLKNYDPQ+DKRFSGT+KL  +PRP M +C+LGD    D 
Sbjct: 16  ILKGSEEKKRNFTETVELQIGLKNYDPQRDKRFSGTIKLPNVPRPNMAICILGDAHDLDR 75

Query: 283 AKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPRFVG 429
           AK   V  M                           SE LIKQIPR +G
Sbjct: 76  AKHGGVDAMSVDDLKKLNKNKKLVKKLAKKYDAFIASEVLIKQIPRLLG 124



 Score = 61.3 bits (142), Expect = 9e-11
 Identities = 28/45 (62%), Positives = 34/45 (75%)
 Frame = +2

Query: 410 RFPXLLGPGLNKAGKFPGLLSHQESMTQXIDEVKGTIKFQMKKVL 544
           + P LLGPGL+KAGKFP  +SH + +   I EVK TIKFQ+KKVL
Sbjct: 118 QIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKFQLKKVL 162


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 369 FGQFLDKLFVLIQFFQSLSIHTWHIQGFSLVTML 268
           +G+F+ +LF LIQ  +   +  W +   + VT++
Sbjct: 385 YGEFVMRLFFLIQKLRKKYLSRWGVLDAAFVTVI 418


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = -3

Query: 204  GETLVLLWVIVLQTNLKLYSLQKVTFLVLRGLKN 103
            G  L  LW IV+ T   L     + F VLR L N
Sbjct: 1184 GSKLTKLWKIVVMTVSFLVGAWLIIFYVLRKLSN 1217


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 97   NAVLQSSKDKKRNFLETVELQIGLKNYD-PQKDKRFSG 207
            N +++SS   K NF +TV +     +YD P+ D  + G
Sbjct: 941  NVLVRSSPSPKNNFDDTVFISYTSIDYDSPELDSVYEG 978


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 283 PRHNAAGLQERKLAFSAAVCILALQCRRNACPSVGHSSSDQFEAL 149
           P H  A LQE   A  AA+    L+ ++NA    G +S D  +AL
Sbjct: 317 PEHELAALQEHNEAHDAAMRQYELERQQNAM-LPGLASIDGLQAL 360


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 379 HQIFWPVS*QAFCSYSIFSKPQHPYMAHSRF 287
           HQ+F+P +  +  SY +   PQ  Y + S +
Sbjct: 415 HQVFYPPTSTSVSSYGLGKTPQPAYGSSSPY 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,105,444
Number of Sequences: 5004
Number of extensions: 38181
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)