Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A04
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    26   4.1  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   7.2  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    25   7.2  
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom...    25   9.5  

>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 498 KELHLHNIRHLTYKQICV 551
           KELH  N R+ TY+Q C+
Sbjct: 410 KELHRVNSRYYTYQQACI 427


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 303 LTKVLINASSYFKTTFHYFSSXWVNTSLFL*SYRYT*TLHSCSSLVLKCHLRHYE 139
           L K+  N   Y K     FS+  ++T+     YR++   +SC+ L L   L + +
Sbjct: 38  LMKITSNGRPYSKDFLELFSTMVISTNFSRNRYRFSYVENSCTLLQLLSTLENLQ 92


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 510 LHNIRHLTYKQICVKNFKSLFMSLLFYK 593
           LHNIR+L  K IC   F     +  F++
Sbjct: 348 LHNIRYLQEKHICFVTFVDPVSAFRFFE 375


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 108 VNLEGKHINIIHNGEDGISTPGWNSYGV 191
           + L GK  NI+ N  D  S   W +YG+
Sbjct: 269 LELGGKSPNIVFNDADLDSAAVWTNYGI 296


>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +3

Query: 126 HINIIHNGEDGISTPGWNSYGVSKYTDNFTKRG 224
           HI +IH  +  +++  W  Y    +  N TK G
Sbjct: 662 HITMIHESQKPVNSRIWEQYLQHMHDKNTTKMG 694


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,506,957
Number of Sequences: 5004
Number of extensions: 49448
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)