Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A04
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    27   0.21 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.8  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +3

Query: 6   VDLVD*FTRILFNVPFLKFPTIYF 77
           V+++D ++RI+F V F+ F  IY+
Sbjct: 461 VNIIDKYSRIIFPVSFMLFNAIYW 484


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 513 HNIRHLTYKQICVKNFKSLFMSLLFYKEI 599
           +N  +  YK++   N+K L+ ++ + ++I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +3

Query: 513 HNIRHLTYKQICVKNFKSLFMSLLFYKEI 599
           +N  +  YK++   N+K L+ ++ + ++I
Sbjct: 89  YNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 90  AHCENFVNLEGKHINIIHN 146
           + C NF N +  H N  HN
Sbjct: 412 SRCANFDNQDNNHYNHNHN 430


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 123 KHINIIHNGEDGIST 167
           KHIN  HN ++G+ T
Sbjct: 222 KHINTRHNTKNGMKT 236


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 181 LFQPGVEMPSSPL*IIFMCL 122
           LF PG E+P+  L  +F+ L
Sbjct: 63  LFTPGQELPARGLTAVFLGL 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,152
Number of Sequences: 438
Number of extensions: 3509
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)