Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.0  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   1.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   1.8  
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos...    26   4.1  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.2  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   7.2  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   9.5  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    25   9.5  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 130 ASHAPGSSLDITTEFRGNKEDANKIDCVLMAEHHNASVL 246
           +S  P  SLD   E+ GN  D + +   L   H++ S L
Sbjct: 311 SSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSAL 349


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 209 VFLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKE 388
           V L+  + +QAF N  H   KKK      K +E+  G  I L+  + K N   ++     
Sbjct: 591 VQLFYEMKLQAFVNANHNAPKKKNLNDSLKSVELE-GNGIKLSSEKGKNNVNKVRNDNAR 649

Query: 389 LDQGF 403
            D GF
Sbjct: 650 FDCGF 654


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 473 LYKLIKKMPKGAVLHAHDTSLLGPDYVLXLT 565
           +YK+  K P   V HAHD S++   Y L ++
Sbjct: 371 VYKVDGKAPVSTVSHAHDNSIVALRYNLRIS 401


>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 119 QGVPPPMLLDRRLI*PQNFEVIKKMPTK 202
           +G+PPP    +RL+ P    V++  P++
Sbjct: 107 EGIPPPFDKQKRLVVPAALRVLRLKPSR 134


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 499 WHFFNQLVQFSFLDIIF 449
           WH F   VQ+ FL I++
Sbjct: 687 WHMFTSFVQYIFLSIMY 703


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -3

Query: 501 FGIFLISLYSSVFLTSSLYSKKCLDKTKGRLCRNPWSSSFVLSFINISLTLVSFSFN 331
           F  F+ S  + + L+  L SK         L    +S SFV++ + + L  +SF FN
Sbjct: 445 FSTFMTSEDAELVLSYDLMSKSLFISVVSTL---NFSLSFVVAILLVPLQFISFRFN 498


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 236 QAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTK 385
           QA+ + +   ++KK+ ++ +K+ E+M  R IVL E    V  +    K K
Sbjct: 453 QAWTSESERELEKKKEQVEKKQEELMQTR-IVLEEQVFLVENMIEDAKAK 501


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 503 GAVLHAHDTSLLGPDYVLXLTYWKYLYV 586
           GA+   +D  +LG D VL  + W+ L+V
Sbjct: 206 GAIF-GYDQGMLGSDAVLATSVWRNLFV 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,659,619
Number of Sequences: 5004
Number of extensions: 53172
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)