Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP05_F_A03
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin pr...    30   1.2  
Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AF518559-1|AAM97343.1|  793|Caenorhabditis elegans inositol poly...    29   2.2  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z81114-5|CAB03287.1|  300|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    28   5.0  
AF101318-9|AAC69349.1|  350|Caenorhabditis elegans Serpentine re...    28   5.0  
U56961-1|AAK39295.1|  118|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>U41108-2|AAQ23121.2|  639|Caenorhabditis elegans Tropomodulin
           protein 2, isoform b protein.
          Length = 639

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
 Frame = +2

Query: 269 KKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKT-KELDQGFRHRRPFVLSKHFFE 445
           +KK+  L  +++  M   D++  E + ++ ++  K K  K+L+    HR+ F  + +  +
Sbjct: 480 EKKKPLLSIQKIREMEKNDVIKKEEDDRLEQLLKKEKEPKKLNN--EHRKLFE-NGNVAQ 536

Query: 446 YKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPD 547
            K + ++  + KLI K P   +     T + GPD
Sbjct: 537 KKPEPRR-HVQKLIAKKPNSILNQTEPTKIEGPD 569


>Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical
           protein Y49E10.22 protein.
          Length = 259

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
 Frame = +2

Query: 209 VFLWLSIIMQAFCNTTHET-VKKKRNELFEKELEMMLGRDIVLNEN---ETKVNEIFMKL 376
           +FL + I+ +A    +H T ++K++NE   K  E M   D +L  +   ET   EI +++
Sbjct: 101 IFLKVGIV-EALRRNSHRTGIEKQKNETIRKIFEKMEDPDEILENSIVLETDEVEIDVEV 159

Query: 377 KTKELDQGFRHRRPFV 424
              +L   F  ++P V
Sbjct: 160 VMNKLKFDFTAKKPIV 175


>Z31590-8|CAA83465.1|  812|Caenorhabditis elegans Hypothetical
           protein R01H10.7 protein.
          Length = 812

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 452 DDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDYVL 556
           D + +++L+ L+K + K A  HA+   L+  D+VL
Sbjct: 495 DTILESQLFSLVKSLQKPATAHAYFHILIRTDFVL 529


>AF518559-1|AAM97343.1|  793|Caenorhabditis elegans inositol
           polyphosphate-4-phosphataseprotein.
          Length = 793

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 452 DDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDYVL 556
           D + +++L+ L+K + K A  HA+   L+  D+VL
Sbjct: 476 DTILESQLFSLVKSLQKPATAHAYFHILIRTDFVL 510


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
 Frame = +2

Query: 269 KKKRNELFEKELEMMLGRDIVLNENE-TKVNEIFMKLKTKELDQGFRHRRPFVLSK--HF 439
           KKK+   + K+++++   D ++NEN  T +  + +    + L QG+  +   +L     F
Sbjct: 255 KKKKILKYGKKIDVVCLIDCIVNENSRTTLKSLDISKSEQILRQGWPEKIADMLPSLTTF 314

Query: 440 FEYKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDYVLXLTYWKYL 580
                 + + E+  LIK  P  + L   DT++   + +  LT+ + L
Sbjct: 315 ILSGKKLTENEMTLLIKSFPNLSCLDISDTNIKNLNGISNLTHLQVL 361


>Z81114-5|CAB03287.1|  300|Caenorhabditis elegans Hypothetical
           protein T04D3.5 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 113 RFLCCFCWSGQPTRRLKTL 57
           R +C FC+  QPT RL T+
Sbjct: 141 RMVCSFCYRAQPTHRLYTI 159


>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
            protein F10B5.7 protein.
          Length = 1780

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 35   PYKIYLKLES*VGESAGRSNKSNIEIVRQGVPPPMLLDRRLI 160
            P  I+ K +   GE  G      +E+V+  +P P+ L+R  I
Sbjct: 917  PKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFI 958


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
            protein F10B5.7 protein.
          Length = 1780

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 35   PYKIYLKLES*VGESAGRSNKSNIEIVRQGVPPPMLLDRRLI 160
            P  I+ K +   GE  G      +E+V+  +P P+ L+R  I
Sbjct: 917  PKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFI 958


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
            protein T04H1.4b protein.
          Length = 1312

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 266  VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 415
            + +KRNE L + + +   L R++   E E K  E+ +++  KELDQ   HR+
Sbjct: 898  ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 949


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
            T04H1.4a protein.
          Length = 1298

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 266  VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 415
            + +KRNE L + + +   L R++   E E K  E+ +++  KELDQ   HR+
Sbjct: 884  ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 935


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
            ceRAD50 protein.
          Length = 1298

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +2

Query: 266  VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 415
            + +KRNE L + + +   L R++   E E K  E+ +++  KELDQ   HR+
Sbjct: 884  ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 935


>AF101318-9|AAC69349.1|  350|Caenorhabditis elegans Serpentine
           receptor, class t protein56 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 255 VVLQNACIMMLSHKNTVNFVGI-FFITSKFCGYIKRRSRSMGGGTP 121
           ++LQ+ CI +      ++FV + FF+T K+  +    S  + GG P
Sbjct: 266 LLLQSICISLTYAVPAISFVTLYFFVTPKWFSHASDISYQLSGGIP 311


>U56961-1|AAK39295.1|  118|Caenorhabditis elegans Hypothetical
           protein T19D7.3 protein.
          Length = 118

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 520 GMKHRTFWHFFNQLVQFSFLDIIFVFKEVFG 428
           G+ H TF+ FF  ++ FSF  +   F E+FG
Sbjct: 6   GLYHATFY-FFTIIIFFSFSPVNCQFLEIFG 35


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
           protein B0416.1 protein.
          Length = 1203

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 290 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKELDQGFRHRRPFVLSKHFFEYKDDVKKT 469
           F++E +    +D +L + + K  EI  KL+ +      + R   V  KH  + +  V K 
Sbjct: 80  FDEEDDKEASKDRILKKIQQK-KEIIQKLRGQPWYMKRKRRTLKVAQKHLQQQEAKVSKA 138

Query: 470 ELYK 481
            LYK
Sbjct: 139 RLYK 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,631
Number of Sequences: 27780
Number of extensions: 298956
Number of successful extensions: 907
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)