Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_A02
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein... 60 3e-10
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 53 4e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ... 41 2e-04
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 35 0.012
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 29 0.59
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 2.4
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 27 2.4
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 3.1
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 25 7.2
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 7.2
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr... 25 9.5
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa... 25 9.5
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 9.5
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 9.5
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 25 9.5
>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
Stg1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 60.1 bits (139), Expect = 3e-10
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Frame = +1
Query: 313 LKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAARQL-GVPAQETFQTVDLW 489
L+ G +LC++ I+ S+M F MENI+AF+ A+Q+ VP+Q+ FQT DL+
Sbjct: 31 LQSGVILCRICKEALGANIR-YKESNMPFVQMENISAFINYAQQVVHVPSQDMFQTSDLF 89
Query: 490 ERQNLNSVVICLQSLGXKAGTY--GK-PSIXPKEADKNVRNFSEEQLR 624
ER+N V+ + S A GK + PK A+K R FS +Q R
Sbjct: 90 ERRNDEQVLRSIHSFSRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQR 137
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 52.8 bits (121), Expect = 4e-08
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Frame = +1
Query: 277 TPQGHMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCMENINAFLEAARQLGV 453
T G F + L++G +L L P+ +IK ++ + F+ +NIN FL+ +G+
Sbjct: 57 TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSDNINKFLDFIHGIGL 116
Query: 454 PAQETFQTVDLWERQNLNSVVICLQSL 534
P F+ D++E +NL V+ C+ +L
Sbjct: 117 PEIFHFELTDIYEGKNLPKVIYCIHAL 143
>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
2|||Manual
Length = 962
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Frame = +1
Query: 289 HMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCMENINAFLEAARQLGVPAQE 465
++D+F + L +G +LC+LA +P + ++ + +NAF +G+
Sbjct: 84 NLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNTVYLNAFFHFLDFIGMFTPF 143
Query: 466 TFQTVDLWERQNLNSVVICLQSL 534
F+T DL R N+ V+ CL +L
Sbjct: 144 RFETKDLVRRFNIPKVIYCLHAL 166
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 34.7 bits (76), Expect = 0.012
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Frame = +1
Query: 301 FYEVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 450
F++ KDG +L KL N+ P+ I K+ N + FKC+EN N + +A+ +G
Sbjct: 145 FFDQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Frame = +1
Query: 277 TPQGHMDNFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLE 432
TP H +F+ L+DG +L + + I PN + KK+N + M FK +EN N ++
Sbjct: 401 TPSIH--DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVD 458
Query: 433 AARQLG 450
+ G
Sbjct: 459 LGKNQG 464
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 0.59
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Frame = +3
Query: 180 QLKPRERSTANTAR-----SWPTSPWQWIRMITGEPENTSGAYGQLLRSA*RRHSSVQAS 344
++K + STA+++R S P + + EP+ G L +S++ S
Sbjct: 221 RIKKQGASTASSSREASLDSTIKQPLSASLLESSEPKEKEEIVGSLEEEGTDESASLEDS 280
Query: 345 QQHPPEH--DQ-KDQHIVDGLQVHGEYQRFPRSRKTVG 449
HP + DQ D+ VDGL + Y PR+R G
Sbjct: 281 LSHPTKSILDQLADKMEVDGLNNNSNYSATPRTRVVNG 318
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 370 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 492
++ +S A E + AF+E A+Q G+P E W+
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWD 158
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +3
Query: 426 PRSRKTVGCTGTGNFSNCRPVGETESQLRRDLLAVTGXKGWNLR 557
P+ + V CTG G+ V +S D L +TG G L+
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLK 159
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +2
Query: 146 MANNRATKSGFAAEAQRKINSKYSEELAHESLAMDSDDHRRTREHLRGIWTT 301
+ N+A +E R++ +KY HE++ + + + +LR WTT
Sbjct: 170 VVGNKAVSFTDHSELSREVAAKYDHGRLHEAVLLSGNPMVAQKRYLRN-WTT 220
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.2
Identities = 21/86 (24%), Positives = 32/86 (37%)
Frame = +1
Query: 259 SPANQRTPQGHMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMAFKCMENINAFLEAA 438
SP N H N Y + D + N + K + S+ F N + +
Sbjct: 233 SPVNDVEYHPHHTNLYIAVNDNGIAFICDNRLQQTCSKTVKASNPLFSVRHNPS--IATL 290
Query: 439 RQLGVPAQETFQTVDLWERQNLNSVV 516
LG + Q + LW+ +NLN V
Sbjct: 291 FALG-----SEQDLQLWDLRNLNKSV 311
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 462 LCRYTQLSCGFEESVDILHALEGHRRCVDLFDHVRVDV 349
L R+ LS +D++ L+G + C HV D+
Sbjct: 67 LARWVHLSPSVHRCIDVVAFLQGQKFCFQNLVHVLQDI 104
>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 173 LIWSLGCLPFRTNNNLINYLNK 108
LIW+ CL T+ +LI YL++
Sbjct: 123 LIWNQWCLSHLTDEDLIAYLSR 144
>SPCC18B5.06 |erf1|sup45|translation release factor
eRF1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 390
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 286 GHMDNFYEVLKDGTLLCKLANNIHPNMIKKIN 381
GH+ + E+LKD + KLA+ + I+ +N
Sbjct: 248 GHIHSLNEILKDPAVESKLADTKYVQEIRVLN 279
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +2
Query: 155 NRATKSGFAAEAQRKINSKYSEELAHESLAMDSDDHRRTREH 280
N A ++ Q K ++ S+EL ESL+ D + R H
Sbjct: 445 NSAKNEHIRSQRQHKTHAAPSKELTKESLSNDQLSVKEKRRH 486
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 9.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Frame = +1
Query: 484 LW--ERQNLN---SVVIC----LQSLGXKAGTYGKPSIXPKEADKNVRNFSEEQLRGWSG 636
LW ER N+N +V+ C Q K +Y + P DKN+ + L +S
Sbjct: 129 LWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSPVTPPINDKNILLPEQSPLSNFST 188
Query: 637 SHISSV 654
+ ISS+
Sbjct: 189 TKISSI 194
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 259 SPANQRTPQGHMDNFYEVLKDGT 327
S AN+RT + M NFYE + T
Sbjct: 7 SIANERTDEARMFNFYEKMPKDT 29
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,968
Number of Sequences: 5004
Number of extensions: 59426
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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