Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP05_F_A01
(415 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 60 5e-10
AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein. 35 0.027
AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (droso... 35 0.027
AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (droso... 35 0.027
AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (droso... 35 0.027
AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (droso... 35 0.027
AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein. 35 0.027
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 31 0.25
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 31 0.25
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 27 7.1
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 7.1
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 9.4
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 9.4
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 60.5 bits (140), Expect = 5e-10
Identities = 28/52 (53%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Frame = +3
Query: 147 LQLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTXKDGILAKN 299
+Q+ DVDP TGR S Y +CGAIRRMGESDD I+RL KDG++ ++
Sbjct: 32 VQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83
Score = 54.0 bits (124), Expect = 4e-08
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +2
Query: 53 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 145
MQNDAG+ V+LY PRKCS+SNR+I KDHAS
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31
>AY819766-1|AAV69856.1| 4250|Caenorhabditis elegans kettin protein.
Length = 4250
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 39 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMY 212
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 839 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 895
Query: 213 VVCGAIRRMGES-DDCIVRLTXKDGILA 293
V A +GE+ C++ +T IL+
Sbjct: 896 SV-RASNLLGEAIRQCVITVTPAGQILS 922
>AF106579-4|AAK82895.1| 4203|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform b protein.
Length = 4203
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 39 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMY 212
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 213 VVCGAIRRMGES-DDCIVRLTXKDGILA 293
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>AF106579-3|ABS19464.1| 4488|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform a protein.
Length = 4488
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 39 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMY 212
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 213 VVCGAIRRMGES-DDCIVRLTXKDGILA 293
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-2|AAM45364.1| 4369|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform d protein.
Length = 4369
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 39 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMY 212
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 213 VVCGAIRRMGES-DDCIVRLTXKDGILA 293
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AF106579-1|AAM45363.1| 4447|Caenorhabditis elegans Kettin (drosophila
actin-binding)homolog protein 1, isoform c protein.
Length = 4447
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 39 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMY 212
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 1077 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 1133
Query: 213 VVCGAIRRMGES-DDCIVRLTXKDGILA 293
V A +GE+ C++ +T IL+
Sbjct: 1134 SV-RASNLLGEAIRQCVITVTPAGQILS 1160
>AB026846-1|BAA90302.2| 4219|Caenorhabditis elegans kettin protein.
Length = 4219
Score = 34.7 bits (76), Expect = 0.027
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
Frame = +3
Query: 39 DVHIKCRTTPVNSLTCTARG--NARPATASSTLRTMLQLQLVIADVDPATGRAADTSKMY 212
++H+ R TPVN T N RP S ++T+ + + D+ G A+ S Y
Sbjct: 756 NIHVDLRATPVNDPTMVIEWFVNGRPLLTGSRVKTLNEFGFIALDI---KGAIAEDSGTY 812
Query: 213 VVCGAIRRMGES-DDCIVRLTXKDGILA 293
V A +GE+ C++ +T IL+
Sbjct: 813 SV-RASNLLGEAIRQCVITVTPAGQILS 839
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 6 SASXQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIA--DVDPA 179
S + P T+ K RTTP S T R ++ ASST + + ++ D
Sbjct: 180 SQEKEVPGTKSQCAPKIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAK 239
Query: 180 TGRAADTSKM 209
GRA +T K+
Sbjct: 240 KGRATETPKL 249
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 31.5 bits (68), Expect = 0.25
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = +3
Query: 6 SASXQFPCTRVDVHIKCRTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIA--DVDPA 179
S + P T+ K RTTP S T R ++ ASST + + ++ D
Sbjct: 180 SQEKEVPGTKSQCAPKIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAK 239
Query: 180 TGRAADTSKM 209
GRA +T K+
Sbjct: 240 KGRATETPKL 249
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 60 TTPVNSLTCTARGNARPATASSTLRTMLQLQLVIADVDPATGRAADTS 203
TTP + T T T++ST +++ V + +P T + T+
Sbjct: 263 TTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTT 310
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 7.1
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 138 WSLAWMRRLLAEHFLGQYKS 79
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 26.6 bits (56), Expect = 7.1
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 57 RTTPVNSLTCTARGNARPATASSTLRTMLQLQLVIADVDPATGRAADTS 203
R T + + T+ GN+ +T+S T R + + I DP T RA S
Sbjct: 56 RPTSYRAGSITSGGNSSNSTSSYTPRNVRAGSVSIGAYDPPTSRADSVS 104
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 251 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 156
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 9.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 251 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 156
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,860,754
Number of Sequences: 27780
Number of extensions: 139043
Number of successful extensions: 406
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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