Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P23
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    39   3e-05
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           31   0.011
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           28   0.058
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    27   0.18 
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.6  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.9  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.9  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.9  
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    22   3.8  

>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 39.1 bits (87), Expect = 3e-05
 Identities = 20/41 (48%), Positives = 30/41 (73%)
 Frame = +2

Query: 305 LSKAFCRLKTTLPWVPADTKLSKLDTLRLAASYIAHLRALL 427
           L++AF  L+ ++P +P+D KLSK+ TL+LAA YI  L  +L
Sbjct: 112 LNEAFASLRKSIPTMPSD-KLSKIQTLKLAARYIDFLYHVL 151


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 30.7 bits (66), Expect = 0.011
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +2

Query: 353 ADTKLSKLDTLRLAASYIAHLRALLHE 433
           A  KLSK++TLRLA  YI  L+ ++ +
Sbjct: 131 ASKKLSKVETLRLAVEYIRSLKQMIED 157


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 28.3 bits (60), Expect = 0.058
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = +2

Query: 362 KLSKLDTLRLAASYIAHLRALL 427
           KLSK++TLR+A  YI  L  LL
Sbjct: 97  KLSKVETLRMAVEYIRSLEDLL 118


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -1

Query: 329 SVCRMLLTKPAFWPVLVH 276
           + C ML ++PA WP  VH
Sbjct: 66  ATCNMLCSEPAIWPKPVH 83


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 248 NCDLSWIACHQNKNRHHQYPL 186
           +CDL W+   + K R +  P+
Sbjct: 711 DCDLGWVEVWERKRRQYLCPV 731


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 LRALLHEPRSAHTPPH 460
           LRALL  P++  TPP+
Sbjct: 126 LRALLTRPQAKKTPPN 141


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 LRALLHEPRSAHTPPH 460
           LRALL  P++  TPP+
Sbjct: 126 LRALLTRPQAKKTPPN 141


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 LRALLHEPRSAHTPPH 460
           LRALL  P++  TPP+
Sbjct: 126 LRALLTRPQAKKTPPN 141


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 328 QSAECF*QNPHSGPFSCI 275
           QS +CF  +   GPF C+
Sbjct: 52  QSGQCFGPSICCGPFGCL 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,541
Number of Sequences: 336
Number of extensions: 2512
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)