Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P23
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    27   3.1  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   4.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   9.5  

>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 SAHTPPHPLSLAWPFAFQHGGSLNCAVSQRW 532
           +A+T   P +  WPF++   GSL  +VS R+
Sbjct: 97  AANTTYRPGTQHWPFSWLFPGSLPASVSNRY 127


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 476 WPFAFQHGGSLNCAVSQRW 532
           WP A Q GG +N + +Q W
Sbjct: 79  WPGALQIGGGINISNAQNW 97


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 378 IHYAWLHPTLRIYE--HYFTSHDQHIPHHIHLVWLGLSR 488
           +H+ W+ PT       HY   + Q +P+H+   +  L++
Sbjct: 185 LHHKWIVPTPYSSHAFHYLDGYSQSLPYHMFPFFFPLNK 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,139,379
Number of Sequences: 5004
Number of extensions: 38222
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)