Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P22
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    29   0.76 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    28   1.0  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   9.4  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +1

Query: 163 PLNRRHKLPKQQKRREPQK*HRHLEISP*FAPRLLLAPGLFIRQ 294
           P+N  +  P + KRR+P +  R+  ++P   PR +  P  F+++
Sbjct: 36  PINVINHSPSETKRRDPVEELRYKPLTPPQDPRKVAPPNSFLKK 79


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = +2

Query: 11  TNLAAVRILLSSTSNQLILIRNHEAEYITDSGG 109
           +++AA+R L ++ +NQ  L  NHE E ++ SGG
Sbjct: 146 SSIAALRNL-NTQNNQSTLASNHEDENVSSSGG 177


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +3

Query: 324 NRFCICSAD-TTCAITEDDTEVHAYIHRCT 410
           N FC CS D T C    D    H  + R T
Sbjct: 66  NYFCTCSEDATVCVYPIDSPTEHTLLARTT 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,243
Number of Sequences: 5004
Number of extensions: 40288
Number of successful extensions: 81
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)