Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P21
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     26   0.26 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.60 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.60 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.60 
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.6  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   9.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 578 SQNLTNVSFDEVTMQFFPFINDTLVITPLWPLNLT 474
           S  L   S    T Q FP+++DTL I P   L L+
Sbjct: 447 SHILQQPSIRTYTQQQFPYVHDTLQIQPQEQLTLS 481


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 436 EVILWDVISXTGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETK 591
           E I  +V S   K+ ++        +S  +G N +  SSK  + K W +E K
Sbjct: 95  EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 146


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 436 EVILWDVISXTGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETK 591
           E I  +V S   K+ ++        +S  +G N +  SSK  + K W +E K
Sbjct: 111 EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 162


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 436 EVILWDVISXTGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETK 591
           E I  +V S   K+ ++        +S  +G N +  SSK  + K W +E K
Sbjct: 168 EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERK 219


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 222 CLFTKFHVPNNNMFTCSNSDVSTTNT 145
           CLF +  + N+N+F  S  DV   +T
Sbjct: 59  CLFHRLALMNDNVFDVSKFDVYLNDT 84


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +2

Query: 269 VLLETTWPLVCLMEILMYLNSPTMKXFVYLLDTNLL 376
           VLL   W ++CL+ ++  ++      F+ L    LL
Sbjct: 393 VLLNFGWQMICLIVVIALVSIIMYIAFIILQYAGLL 428


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 513 VIYKWKKLHCDF 548
           VIY+WK +  DF
Sbjct: 39  VIYEWKHIDFDF 50


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 218 FSPSFMSQIITCSHAPTAMYLPLIPFNVTCVXLQSALAIILKE 90
           F PSF S  +       A+   L+  + +CV   +  A++ K+
Sbjct: 223 FWPSFNSAALEGDDQQRAIINTLLSISASCVIAFATSALVSKD 265


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,455
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)