Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP04_F_P18
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 216 2e-57
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 216 2e-57
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 31 0.13
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.6
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.8
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 26 3.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.0
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 6.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 6.6
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 6.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 216 bits (527), Expect = 2e-57
Identities = 95/117 (81%), Positives = 105/117 (89%)
Frame = +2
Query: 29 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 208
CYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA
Sbjct: 8 CYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEA 67
Query: 209 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 379
RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 68 ARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 79.4 bits (187), Expect = 4e-16
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +3
Query: 384 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDXFXKXL 563
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VS KWGF++Y RD + +
Sbjct: 126 VARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEK- 184
Query: 564 XXXGRLPNDGCIVQY 608
G + DGC ++
Sbjct: 185 RSRGEIIPDGCYAKF 199
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 216 bits (527), Expect = 2e-57
Identities = 95/117 (81%), Positives = 105/117 (89%)
Frame = +2
Query: 29 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 208
CYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA
Sbjct: 8 CYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEA 67
Query: 209 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 379
RIC NKYLVK GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G
Sbjct: 68 ARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNG 124
Score = 79.0 bits (186), Expect = 5e-16
Identities = 37/75 (49%), Positives = 51/75 (68%)
Frame = +3
Query: 384 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDXFXKXL 563
V RV IGQ +MSVR+ D +A IEALRR ++KFPG+Q+I VS KWGF++Y RD + +
Sbjct: 126 VARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEK- 184
Query: 564 XXXGRLPNDGCIVQY 608
G + DGC ++
Sbjct: 185 RSRGEIIPDGCYAKF 199
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 31.1 bits (67), Expect = 0.13
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +2
Query: 2 HHGAPASEXC-YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDE 175
H S+ C Y+ N ++FC V + KI + +KRA +D LC+ +S +
Sbjct: 23 HKNLHISKSCSYQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPD 82
Query: 176 YEQLSSEALEAG 211
E ++ +LE+G
Sbjct: 83 AELVAFGSLESG 94
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 89 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 208
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 123 RERPLTTFHCACTWCPTNMNS 185
R RP +T H +CT+C + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 403 PMRTRXTVTLRLAKRTTHPSLEPISSS 323
P + T +LAKR T PSL P S+
Sbjct: 950 PRSEPVSTTTKLAKRITQPSLSPARST 976
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 451 SSRLCAVPSSSSPDVKRSTYQXSGVS 528
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 5.0
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 110 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 253
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 208 CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 92
CL L L + H++ ++W+ +N R LL + + + G
Sbjct: 940 CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 251 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 355
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 75 VGVYLIPRSVSSIWV 119
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,044
Number of Sequences: 5004
Number of extensions: 55811
Number of successful extensions: 168
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -