Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P18
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical pr...   221   4e-58
Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like pro...    28   4.6  
U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell l...    27   8.1  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    27   8.1  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    27   8.1  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    27   8.1  

>Z48334-1|CAA88308.1|  214|Caenorhabditis elegans Hypothetical
           protein F10B5.1 protein.
          Length = 214

 Score =  221 bits (539), Expect = 4e-58
 Identities = 97/117 (82%), Positives = 104/117 (88%)
 Frame = +2

Query: 29  CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 208
           CYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E LSSEALEA
Sbjct: 8   CYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHLSSEALEA 67

Query: 209 GRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQG 379
            RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG
Sbjct: 68  ARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQG 124



 Score = 70.9 bits (166), Expect = 7e-13
 Identities = 38/78 (48%), Positives = 49/78 (62%)
 Frame = +3

Query: 384 VXRVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSXKWGFTKYERDXFXKXL 563
           V RV IG  + S+R  +      IEA RRAKFKFPGRQ I  S KWGFTK++R+ + + +
Sbjct: 126 VARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYER-M 184

Query: 564 XXXGRLPNDGCIVQYRPE 617
              GRL +DG  VQ + E
Sbjct: 185 RAEGRLRSDGVGVQLQRE 202


>Z46791-1|CAA86761.1|  476|Caenorhabditis elegans Hypothetical
           protein C09G5.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 372 GLPNAPRIPVWSLSAPA 322
           G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248


>AF099919-10|AAC68792.1|  205|Caenorhabditis elegans Max-like
           protein 2 protein.
          Length = 205

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 68  RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 214
           R C  +   K  I D  K+ A ++     + +++ EYEQ++S   +AG+
Sbjct: 93  RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141


>U50199-4|AAA91264.2|  142|Caenorhabditis elegans Abnormal cell
           lineage protein 32 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 394 FALDSPSCPCALVTGGRHRSSRLCAVPSSSSPDVKR 501
           F+LDSP+ P +L  GG     + C    + SP + R
Sbjct: 36  FSLDSPNYPDSLSNGGGKDDKKKCRRYKTPSPQLLR 71


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 130 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 29
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 130 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 29
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 130 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 29
           RS +  IE   +D+ +  TP +P+   +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,136,899
Number of Sequences: 27780
Number of extensions: 332619
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)