Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P17
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    91   1e-19
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    88   9e-19
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    88   9e-19
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   7.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   9.3  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 37/69 (53%), Positives = 58/69 (84%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           M+Y+A YLL  +GGK++P+A+D+E +LS+VGIEA++E+++ +I E NGKD+++ IAAG E
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 274 KLXSMPVGG 248
           KL ++P GG
Sbjct: 61  KLATVPTGG 69


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 37/69 (53%), Positives = 57/69 (82%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           M+Y+A YLL  +GGK +P+A+D+E +LS+VGIEA+AE+++ +I+E NGK++E+ IAAG E
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 274 KLXSMPVGG 248
           KL ++P  G
Sbjct: 61  KLSTVPSAG 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 88.2 bits (209), Expect = 9e-19
 Identities = 36/69 (52%), Positives = 58/69 (84%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           M+Y+A YLL  +GGKN+P+A+D+E +LS+VGIE+++E+++ +I E +GKD+++ IAAG E
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 274 KLXSMPVGG 248
           KL ++P GG
Sbjct: 61  KLATVPSGG 69


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 321 SVITFLSFSASASIP--TELRIFSTSAAAGVFLPPSTAS 431
           SV T LS SAS+SIP  +     STS ++   +P S++S
Sbjct: 9   SVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 303 TSLPLXSVITFLSFSASASIPTELRIFSTSAAAGVFLPPSTASKY 437
           + L + S  T +S S+  S+PT+  +  T + +    PPS  S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 388  VEKILSSVGIEADAEKLKKVITEXNG 311
            V++I   VG+E D+E  K  + E  G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,284,733
Number of Sequences: 5004
Number of extensions: 16621
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)