Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P17
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     85   3e-17
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    74   1e-13
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           73   1e-13
07_01_1001 - 8460467-8460799                                           60   2e-09
07_03_0321 + 16757414-16757743                                         58   6e-09
01_06_0127 - 26718452-26718989,26719082-26720211                       31   0.78 
01_06_0098 - 26416768-26416998                                         30   1.8  
12_02_1217 + 27082452-27083593,27085041-27085158                       29   2.4  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 85.4 bits (202), Expect = 3e-17
 Identities = 38/70 (54%), Positives = 54/70 (77%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           M+ +A YLLAVLGG  +P+A D++ IL SVG+EA+ E+L+ +++E  GKD+ + IAAGRE
Sbjct: 1   MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGRE 60

Query: 274 KLXSMPVGGG 245
           K  S+P GGG
Sbjct: 61  KFASVPSGGG 70


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/71 (45%), Positives = 49/71 (69%)
 Frame = -3

Query: 457 KMRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGR 278
           +M++++ YLLA L G   P+A D+  IL SVG E D  K++ ++++  GKD+ + IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252

Query: 277 EKLXSMPVGGG 245
           EK  S+P GGG
Sbjct: 253 EKFASVPCGGG 263


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 31/70 (44%), Positives = 49/70 (70%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           M++++ YL+A L G ++P A D+  IL SVG E D  K++ ++++ +GKD+ + IA GRE
Sbjct: 1   MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60

Query: 274 KLXSMPVGGG 245
           K  S+P GGG
Sbjct: 61  KFASVPSGGG 70


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 41/68 (60%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           MR+VA YL+A +GG  +P   DV  IL +VG + D +KL  +  +  GKD+ + +AAG E
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60

Query: 274 KLXSMPVG 251
            L    VG
Sbjct: 61  MLAFGGVG 68


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 58.0 bits (134), Expect = 6e-09
 Identities = 27/62 (43%), Positives = 39/62 (62%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           MR+VA YL+A +GG  +P   DV  IL +VG + D +KL  +  +  GKD+ + +AAG E
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60

Query: 274 KL 269
            L
Sbjct: 61  ML 62


>01_06_0127 - 26718452-26718989,26719082-26720211
          Length = 555

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = -3

Query: 457 KMRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKK 332
           KM   A Y  A++ G    AA D++K+LS + IEA+ EKL K
Sbjct: 242 KMPETARYT-AIIDGNAKQAANDMQKVLS-IEIEAEQEKLAK 281


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -3

Query: 403 PAAADVEKILSSVGIEADAEKLKKVITEXNGKD 305
           P    V KI+ +V IEAD+ + K ++    GKD
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>12_02_1217 + 27082452-27083593,27085041-27085158
          Length = 419

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 436 YLLAVLGGKNTPAAADVEKILSSVGIEADAEKL 338
           Y+LA+    NTPA +D E+    VG +AD + L
Sbjct: 27  YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,731,303
Number of Sequences: 37544
Number of extensions: 117537
Number of successful extensions: 294
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)