Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP04_F_P17
         (645 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    69   2e-12
U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    67   1e-11
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    31   0.92 
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    31   0.92 
U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical pr...    29   3.7  

>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 35/68 (51%), Positives = 45/68 (66%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           MRYV+ YLLAVLGG   P   D++ ILS+VG++ADAE  K V++   GK VE+ IA G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 274 KLXSMPVG 251
            L S+  G
Sbjct: 61  GLVSVSGG 68


>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 30/69 (43%), Positives = 43/69 (62%)
 Frame = -3

Query: 454 MRYVAXYLLAVLGGKNTPAAADVEKILSSVGIEADAEKLKKVITEXNGKDVEQXIAAGRE 275
           M+Y+  YLLA LGG  +P+A DV K+L + G++ D E    V+    GK + + IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 274 KLXSMPVGG 248
           KL S+P GG
Sbjct: 61  KLSSVPSGG 69


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 409 NTPAAADVEKILSSVGIEADAEKLKKVITE-XNGKDVEQXI 290
           +TPA+A   +I  + GI    EK+  +ITE  N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = -3

Query: 409 NTPAAADVEKILSSVGIEADAEKLKKVITE-XNGKDVEQXI 290
           +TPA+A   +I  + GI    EK+  +ITE  N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>U28971-9|AAK68669.1|   90|Caenorhabditis elegans Hypothetical
           protein B0244.11 protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 306 SLPLXSVITFLSFSASASIPTELRIFSTSAAAGVFL 413
           SLPL   + F+S S+S+S P    +F +  +  +FL
Sbjct: 32  SLPLFQFVCFISGSSSSSFPYSQPVFISHTSLTIFL 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,220,599
Number of Sequences: 27780
Number of extensions: 94520
Number of successful extensions: 260
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)